Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01773 ATGTCATGGTTGGCTCTCTCCATTGCTAACACCCTTCGCCTTGACGACGAAGAAGATGAGCAGCACAACGACGTCGTATCTTCTTCTTCTTCCACCATTACCCGCAACCAGATGGAATCCCAATCCCAATCCCAATCCCAATCCCAACCCCAACTCGACGACGAAGCATTATCTCGCCGCGTCAAAGAGGACTTGACTGAATTCAAACAAACCCTAACCCGCCAATTTTGGGGCGTGGCCACTTTCCTTGCTCCTCCTCCGCCTCCGCCGGAACCGGGGCCGACTCATCATCTCAACCCGGCAGAGGATCTGGCTGCCCCTCCCGATTGGAAGTCGTTCGAGGCGTCTAATCAGTCTGATCCATCGATCTCCGGGGACGAAGAGGACCTGACTGATTCGATTGAGGTTTTGAATATGCGTTCCAATCATGACGCCTATGCGAAATCGGGGATTTTACAGGAGGAATGCTATGAGGTGGATTGGGAAGGCGCTGTTGGGATCACTGATGAAGTGCTGACGTTTGCCACGAACATTGCAATGCACCCTGAGACTTGGATTGATTTCCCAATTGACGAGGAGGAGGACAACGGTGATTTTGAAATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACATCTTGCTCCTAGATTGGCTGCTCTCAGATTTGAGCTCTGTCCTTGCCATATGAGTGAGAGTTACTTTTGGAAAGTCTACTTTGTGCTCCTGCATTCAAGACTCAATAAACAGGATGCTGAGGCTTTATCTACTCCACAGGTAGCAGAAGCCAGATCAATCTGGATGCAGGAATTACAAAAGAAGACCAAGCCAGAGACTTTCTGGTGTGGAAGAGACACTTTTGAATTAAAAGACAGCTCTGATTTGTTGCAGGAAGATGATAGCTCCCTGGGCCTTGAAACTCATTCTGTATCTACGCTACCTTGGACATTTACATCTGAGCCAAGCATGTCGTCTATGTCGAGCAATTGTGAGACAGAAAAATACCAAATAGAGACTTCTGAAACACAATTCATTGATAAGTCCGTCATCGTTGAAAAACCTATAATTAAAGATGAGGATAAAAACTCGACGATTGGGTCTTCTTCAAAATTCCTTGTTCAGAACTACAACGACGAGTCAGATAATGATTGGCTAGAGGAAGACTCTGGGGCCATCCTCCCTCTCGGGTACGACGAAGATATTTCTTTCAGTGATCTCGAGGATGATGATATGAAGAAAGCGCTAAAAACAGCCGAAGGAGCCACCGAATTGAGGCAGTTGAGAAGAGGATTCTGTTGGATGGAAGTTACCCATCATCTCATTGGTATCTACAGAACCACCATAATGGACCATTCTTTCTATTTGATTGCTAAATTGAACCGAAGCGTACTGACCACAATCACTCTGGATGAGATTTGTTTTCGAGTTAGAAAGACCACAAACAGGATGAAGAATGGAAACGGAAGACCGGGAATATTCTACAGAACCGAGAGGAAATTCACCAACAAATTTGCTACTCTCCCTCTTGCTATTTGGAAATTTCTCTGTATGGATTTTGAACTTGTTAGAAGGGGCTTGGGATTCTCCCAAAGGAGGAAGAAATGGCTTGTTCTATTGGCTCTCATGGGGGTCTCTGGTTACGGAGTTTATAAGGTCTATCATTTTCCCTCCGTCGAGTGGAAGAGGAAGAGGCTGATGAAGCTCTTCGGTGCCATGATTTCCGTCGCTGAAATGGTTGCGGATTCTTCTGAAGCAATCGGAGTAATTTCTAAAGATTTGAAGGAGTTTCTGAAATCTGATTCCGATCGAATTCCCAACAGCTTGAAGCAAATTTCCAAACTCGCTAAATCGGAGGAATTTTCGGAATCTCTGGAGAAGGTCACCGAGGCATTTACGGTTGGGATGATGAGAGGGTATAAATCTGTAACAAAGAACGACGGGAATTTGGAGGCTGATTCGGTGAATTCGAGCTCTTCTTCTGGCGTCGTCGAGAAGCTTTTCTTAACAGCTGGGACTGGTTTTGCTTCTGTTGTGGTTGGAAGTTTTGCAAAGAATTTGGTGATGGGGTATTACTCGATCCCTGGATCAGTCGATGATGCTTACAAATCTGGATCTGAATTTTCAGACGTGCCTAGATGGGTAACTGTGGCCTCCGACGAGAAATGCAAAAATGTTATAGCAGATTGCATACAAGTTTTTGTTAGCACTGCAGTTTCTGTATATCTTGATAAAACAATGGATGTTAATGTGTACAATGATCTCTTTAGTGGATTGACCAATCCCACTCATCAGGACAAGGTGAAGGACATGGTTGTTTCTGTTTGTAATGGAGCTGTGGAAACTCTTGTAAAAACATCTCACCAGGTCTTGACAAGCTCGCGATCGACTTCGAATTTGAGTCCGGTTTCATCCTGTAATGGACTGTCAAAGCTAGGAGACGATCTCTTTTCAGAAGAAGCTTCTTCAAAGAAGATGGCTGCGGCCAGCTCAATTGAGAGTAGCCAAAATGGGTGGATTGACACAGTTTCATCTACTCTGGCTGTTCCTAGAAACAGGAAGTTTGTGCTTGATTTAACTGGTAGAGTGACATTTGAAACGACAAGATCTGTTGTGGATTTTTTGTTGTGGAAGCTAATGGATGGTCTCAAGAGAAGTTTTGGTATAGTTCATGATGAGGTTGTGGGTAGGGGTTTGGAAGTCGTAAGCTACTTCAGTGCAAAAAAGAGAGTAAAAGCTGAAGTGAGAGGGAAGGATAATAGGGAAGCTGCCAGCTATGAGCGGCGGCAAATACACTCATGCAGGCCCCGTAGGACCATTGCGGGTAGCTTCTCCATCAGATCAATTTCTATGGAGTCAAGAGTGAGAACTTCTTCATCAACCCATGCCTCTCCAGCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTCACAGCTTTCTTTGGATCCTTGGAACGATGCTCTTGTATTCGTATTGCCACAGCTGAGGACGACGGCGATGAGGCGAATGACGCTCCTTTGATCCCAAAAGATGTAAACCATCGACAGGACGGCGATGCAGCTGGCCGGAGGAGGGCCGGAAAAGGCAAGAAGTGTCAGCCACTTGTAGCTGCAATCTAA 3135 45.49 MSWLALSIANTLRLDDEEDEQHNDVVSSSSSTITRNQMESQSQSQSQSQPQLDDEALSRRVKEDLTEFKQTLTRQFWGVATFLAPPPPPPEPGPTHHLNPAEDLAAPPDWKSFEASNQSDPSISGDEEDLTDSIEVLNMRSNHDAYAKSGILQEECYEVDWEGAVGITDEVLTFATNIAMHPETWIDFPIDEEEDNGDFEMSDAQKEHAFTIEHLAPRLAALRFELCPCHMSESYFWKVYFVLLHSRLNKQDAEALSTPQVAEARSIWMQELQKKTKPETFWCGRDTFELKDSSDLLQEDDSSLGLETHSVSTLPWTFTSEPSMSSMSSNCETEKYQIETSETQFIDKSVIVEKPIIKDEDKNSTIGSSSKFLVQNYNDESDNDWLEEDSGAILPLGYDEDISFSDLEDDDMKKALKTAEGATELRQLRRGFCWMEVTHHLIGIYRTTIMDHSFYLIAKLNRSVLTTITLDEICFRVRKTTNRMKNGNGRPGIFYRTERKFTNKFATLPLAIWKFLCMDFELVRRGLGFSQRRKKWLVLLALMGVSGYGVYKVYHFPSVEWKRKRLMKLFGAMISVAEMVADSSEAIGVISKDLKEFLKSDSDRIPNSLKQISKLAKSEEFSESLEKVTEAFTVGMMRGYKSVTKNDGNLEADSVNSSSSSGVVEKLFLTAGTGFASVVVGSFAKNLVMGYYSIPGSVDDAYKSGSEFSDVPRWVTVASDEKCKNVIADCIQVFVSTAVSVYLDKTMDVNVYNDLFSGLTNPTHQDKVKDMVVSVCNGAVETLVKTSHQVLTSSRSTSNLSPVSSCNGLSKLGDDLFSEEASSKKMAAASSIESSQNGWIDTVSSTLAVPRNRKFVLDLTGRVTFETTRSVVDFLLWKLMDGLKRSFGIVHDEVVGRGLEVVSYFSAKKRVKAEVRGKDNREAASYERRQIHSCRPRRTIAGSFSIRSISMESRVRTSSSTHASPACGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDAPLIPKDVNHRQDGDAAGRRRAGKGKKCQPLVAAI 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11897853 11906485 - CmaCh01G017730.1 Cma01g01773 287466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01773 1044 MobiDBLite consensus disorder prediction 80 128 - -
Cma01g01773 1044 MobiDBLite consensus disorder prediction 17 56 - -
Cma01g01773 1044 SUPERFAMILY BSD domain-like 166 253 IPR035925 -
Cma01g01773 1044 MobiDBLite consensus disorder prediction 25 54 - -
Cma01g01773 1044 Gene3D BSD domain 164 260 IPR035925 -
Cma01g01773 1044 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 414 - -
Cma01g01773 1044 ProSiteProfiles BSD domain profile. 203 248 IPR005607 -
Cma01g01773 1044 MobiDBLite consensus disorder prediction 1016 1031 - -
Cma01g01773 1044 Pfam BSD domain 196 252 IPR005607 -
Cma01g01773 1044 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 414 - -
Cma01g01773 1044 SMART wurzfinal6 196 248 IPR005607 -
Cma01g01773 1044 MobiDBLite consensus disorder prediction 1016 1044 - -
Cma01g01773 1044 MobiDBLite consensus disorder prediction 82 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01773 - - - bhj:120085673 647.506
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01773 Cma09g00303 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01773 Cma-Chr1:11897853 Cma09g00303 Cma-Chr9:1248217 0 dispersed
Cma04g01578 Cma-Chr4:7998597 Cma01g01773 Cma-Chr1:11897853 3.95E-08 dispersed
Cma10g00279 Cma-Chr10:1238153 Cma01g01773 Cma-Chr1:11897853 2.13E-07 dispersed
Cma11g00230 Cma-Chr11:1160847 Cma01g01773 Cma-Chr1:11897853 1.39E-08 dispersed
Cma02g00910 Cma-Chr2:5424624 Cma01g01773 Cma-Chr1:11897853 3.15E-07 transposed
Cma02g01131 Cma-Chr2:6696362 Cma01g01773 Cma-Chr1:11897853 3.62E-12 transposed
Cma09g00304 Cma-Chr9:1251143 Cma01g01773 Cma-Chr1:11897853 1.27E-56 transposed
Cma01g01773 Cma-Chr1:11897853 Cma03g00898 Cma-Chr3:6569549 4.78E-91 wgd
Cma01g01773 Cma-Chr1:11897853 Cma07g00638 Cma-Chr7:2769769 5.32E-59 wgd
Cma01g01773 Cma-Chr1:11897853 Cma09g00302 Cma-Chr9:1243301 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g620 Blo01g01489 . Bda01g00597 Bda03g00164 Bpe02g00460 Bpe04g00148 Bma04g00137 . . . Cma01g01773 Cma09g00303 Car01g01383 . . Cpe06g00213 . . . . . . . . . . . . . . . Cone4ag1627 Cone7ag1323 . . Lsi04g01465 Csa04g02496 . . . . . . . . . . Sed13g1821 Cmo01g01832 Cmo09g00303 . . . Car09g00255 . Cpe02g00231 Bhi09g03204 Tan01g4673 Cmetu07g0666 . Hepe01g1844 Mch11g0378 . . . . . . . . . . Chy07g00205 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01773 Cma_Chr01 FPKM 8.0284 8.596756 7.845115 7.445156 6.2081 6.35181 6.6938 5.773821 5.224482 6.125776