Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01775 ATGCCGATGTACCAGCCTTCTTCCGGTCGGAGGAGAGAGGCCGATTCGGAGCTGGGTTTGGGTGGTGGTGGTGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGCGGCGGTGGGTTAATCTGCGACGGTGGAGGGGCTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTTTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCCAATATCCTCAAATGGTTTTCTCTTGGTCATTTCACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACCCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTTGGCAGAAGTATTTGGCGATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGACACTTTGAAGAAGGTCAAGGGCCAAGCCAGAGTCCGAGCTTTGAAGGAGCTTCGACAAGTTGTCGCCTCGAATTCTTCGGCGAAGAAAACCGTGGAGGACAATGGCGGTCTTGGTTCGATTTTGTCTTTGTTAGGTCCTTTCACATCCCATGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGAAGAAACCTTGTTCAACCTGCGAAGATTTCATTAATGGTGGATATGTTGAATGAGGGATCCACTGAGACTAAAATCAACTGCACCAGATTGATTGAAACTTTGCTGGATGGTGATGATTGTGGGGCAGACACTGTCTCGAGTTTTAGTCTCTTAGTTGGATTGCTGAGATTAATCAAAGAGAAAAAACACCCAAATGGTGTTCTTGCTGGGTTAAGATTGCTAAAAGCTCTGTGCTGCCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATCCCACAATTGATTGAAATTCTCCCGAATTTCGACCCGGAATGTTTGGAGCTAGCTCTTCATGTATTAGACTCGCTTTCGTCCCTCTCGGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTACAAACTTAGTGAAGTTGTTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTTGCCCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGCGGTTGCAATCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTGTGCAGCTTAAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1368 47.37 MPMYQPSSGRRREADSELGLGGGGGGGGQVLDVETAVKDGILGGGGLICDGGGAEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVASNSSAKKTVEDNGGLGSILSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTETKINCTRLIETLLDGDDCGADTVSSFSLLVGLLRLIKEKKHPNGVLAGLRLLKALCCQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTITNLVKLLMRISESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11908140 11909507 - CmaCh01G017750.1 Cma01g01775 287468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01775 455 Gene3D - 152 276 IPR011989 -
Cma01g01775 455 SUPERFAMILY ARM repeat 146 438 IPR016024 -
Cma01g01775 455 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 44 454 - -
Cma01g01775 455 PANTHER WDSAM1 PROTEIN 44 454 IPR045185 GO:0061630
Cma01g01775 455 MobiDBLite consensus disorder prediction 1 26 - -
Cma01g01775 455 CDD RING-Ubox_PUB 75 117 IPR045210 -
Cma01g01775 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 151 IPR013083 -
Cma01g01775 455 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842|GO:0016567
Cma01g01775 455 Pfam U-box domain 71 141 IPR003613 GO:0004842|GO:0016567
Cma01g01775 455 SMART Ubox_2 74 137 IPR003613 GO:0004842|GO:0016567
Cma01g01775 455 SUPERFAMILY RING/U-box 65 141 - -
Cma01g01775 455 Gene3D - 277 449 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01775 Cma12g00605 CCT
Cma01g01775 Cma05g00129 CCT
Cma01g01775 Cma09g00301 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01775 Cma-Chr1:11908140 Cma04g00485 Cma-Chr4:2469383 2.79E-42 dispersed
Cma01g01775 Cma-Chr1:11908140 Cma12g00605 Cma-Chr12:3181039 0 wgd
Cma01g01775 Cma-Chr1:11908140 Cma05g00129 Cma-Chr5:572674 0 wgd
Cma01g01775 Cma-Chr1:11908140 Cma09g00301 Cma-Chr9:1239658 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01775 - - csv:101223113 783.097