Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01777 ATGATCATCAGAACCTTCTCGACTCCTGCATTCGTAATGAAAAGAAAACCACATATCTTGTTGGTGTTCTTTCGAATTTGGTGCGCTTGGATTTCTCCGATGGCCACTTTTGGTGGTTTCAGATCTTATGTGCTCTCCGCCGCCGCTGCAGGCTCATTCTGGAGTGTGAAGTATCTGCCAGGATTTGCAGGGCCTCTTCCGTTTGAACTCGAAACTGGATATGTCGGTGTGGGGGATTCGGAGGAAGTTCAGGTGTTTTATTACTTTGTGAAGTCCCAAGGAAATCCCCAAACCGATCCTCTAATGACATGGCTCATCGGAGGTCCCGGTTGCTCTGCTCTCTCTGGATTCGCCGTGGAAATCGGTCCAGTAAATTTCAAGATAGAGCCATACAATGGAAGCACACCTCAACTGATCTTGAATCCCCATTCATGGACCAAGGTTGTAACAATTATTCACCTTTTTATTTCTTTTGCAATGACACTAACTTGCAATAGGGATGGTGATATCTGCCAGAAAGCCAGTATATTATTTATAGATATGCCTGTGGGCACTGGATTTTCATATGCTCGAACTCCACAAGGCTTGAAGAAAGGAGATCTACTTCAAGTTCAACAAAATCATCAATTTTTGCGAAAGTGGCTGACTGATCACCCAGAGTTCATTCCTAATCCATTTTACGTCGGTGGGGACTCGTATTCTGGTATCATTATTCCACCTCTTACTCAAGCAATTTCAGAAGGAAATAAACATCTCTTCCCAGCTATAAACCTTCAGGGATACATAGAAGGAAATCCTTTTAGTGTACGTAGAACAGTTAATAATTATAGGGTTCATTATGCTCATAAGATGTCCCTCGTCTCTGATGAACTATATGAGTCATTGAAAACTAGTTGCAAAGGAGAATTTGAGAGTATCGATCCAATTAATTTGGAGTGCATCAAACATGTTTCTACATATAAAAAGTGTGTGAGTAGAATCAGTTTAGCATGTATTATGTGTCCTTATTGTACCGATGCTTCTCGAGCGCCAGAAAATACGTTTGGTGGGCAGAGATCCCTCTATGATACATCCCAAAATCTGTTTCTGGCTCCTAGAGTGTTACCTCCTCTTTCTCTTGACTGTGATGAGTATAAATACTACCTTAGTTATTATTGGGCGAACGACAATCAAGTTCGGAAAGCACTTCATATACGCGAGGGAACGGTTGGAGAATGGTTTAGATGCGAAAGTAAAAAAGATTATCAATTTGATATTACGAATGTTCTTCCTTATCATGTGAATCTTAGCTCCAAAGATTATCGATCTTTGATTTTTAGTGGGGATCATGATATGATGGTGCCGATTCTAGACACTGAAGCATGGATCAAATCTCTAAATTATTCCATTGTCGATGAGTGGAGACCTTGGTTTGACGATGAGGATCAAGTACTTGGATACACAAGAACTTTTGCAAACAACATGACATTTGCCACGATAAAAGTGGTCTCCGCCGCCGCAGGCTCATTCTGGAGTGTGAAGTATCTGCCAGGATTTTCAGGGCCTCTTCCATTTGAACTCGAAACTGGATACGTGGGTGTGGGAGATTCGGAGGAAGTTCAGGTGTTCTATTACTTTGTGAAGTCCCAAGGAAATCCCCGAACCGATCCTCTAATGACATGGTACATCGGCGGTCCAGGTTGCTCTGCACTCTGTGGCTTTGCCTTGGAAATTGGCCCTCTGAACTTCAAGATAGAGGCATACAATGGAAGCTGGCTGGCTGATCATCCAGAATTCATTCGTAACCCATTTTATGTTGGTGGTGGCTCGTATTCTGGTATGATTGTTCCATCTCTTACTCAAGCAATCTCAGAAGGTAATAGCCATGGCTTCCCAATTATAAACCTTCAGGGATACATAGAGGGCAATCCTTTCAGTGTGCATAAAACAAATGATAATTATAAGATTCCATATGCTCATAGGATGTCCTTCATCTCCGATGAACTATACGAGTCATTGAGAAGCAGCTGCAAAGGAGAATATAATAATGTTGATCCAACTAATGTGGAGTGCATTAAATATGTATCCGCTTACCAAAAGCCTCACTGTGAGGATGCTACTAAAGTGACGGAAGCTGCTACGTTTAATGATGCGAGGAGATCCCTCTACAATGCTTCTGAACAACAGTTTCTTTCTCCCAGAGTGTTGCCTTCGATTCCTCTCGAGTGTGATGAGTATGCGTTTTACCTCAGTTATTATTGGGCTAATGACAATCGAGTTCGGAAAGCTCTCCATGTACGTGAGGGAACAATTGGAGAATGGTTTAGATGTCAAAGTACAAAAGATTACCAATATGATTTCACGAGTATGGTTCCTTATCATATGAATCTTAGCTCTAAGGGCTATAGGTCTTTGATTTTTAGCGGAGATCATGATATGAAGGTGCCAATTTTGGACACTGAAGCATGGATCAAATCTCTAAATTATTCACTTATTGATGAATGGAGGCCTTGGTTTAACGAGGAGGATCAAGTTCTTGGGTACACAAGGACTTATGCAAACAACATGACATTTGTATCCATAAAAGGCGGAGGACACACCCCACAAACCATGCAGCACCAAAGTGGCATAATGTTTAGCAGATGGATAGTTGGAAATCCGTTGTAA 2646 41.69 MIIRTFSTPAFVMKRKPHILLVFFRIWCAWISPMATFGGFRSYVLSAAAAGSFWSVKYLPGFAGPLPFELETGYVGVGDSEEVQVFYYFVKSQGNPQTDPLMTWLIGGPGCSALSGFAVEIGPVNFKIEPYNGSTPQLILNPHSWTKVVTIIHLFISFAMTLTCNRDGDICQKASILFIDMPVGTGFSYARTPQGLKKGDLLQVQQNHQFLRKWLTDHPEFIPNPFYVGGDSYSGIIIPPLTQAISEGNKHLFPAINLQGYIEGNPFSVRRTVNNYRVHYAHKMSLVSDELYESLKTSCKGEFESIDPINLECIKHVSTYKKCVSRISLACIMCPYCTDASRAPENTFGGQRSLYDTSQNLFLAPRVLPPLSLDCDEYKYYLSYYWANDNQVRKALHIREGTVGEWFRCESKKDYQFDITNVLPYHVNLSSKDYRSLIFSGDHDMMVPILDTEAWIKSLNYSIVDEWRPWFDDEDQVLGYTRTFANNMTFATIKVVSAAAGSFWSVKYLPGFSGPLPFELETGYVGVGDSEEVQVFYYFVKSQGNPRTDPLMTWYIGGPGCSALCGFALEIGPLNFKIEAYNGSWLADHPEFIRNPFYVGGGSYSGMIVPSLTQAISEGNSHGFPIINLQGYIEGNPFSVHKTNDNYKIPYAHRMSFISDELYESLRSSCKGEYNNVDPTNVECIKYVSAYQKPHCEDATKVTEAATFNDARRSLYNASEQQFLSPRVLPSIPLECDEYAFYLSYYWANDNRVRKALHVREGTIGEWFRCQSTKDYQYDFTSMVPYHMNLSSKGYRSLIFSGDHDMKVPILDTEAWIKSLNYSLIDEWRPWFNEEDQVLGYTRTYANNMTFVSIKGGGHTPQTMQHQSGIMFSRWIVGNPL 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11913439 11920667 + CmaCh01G017770.1 Cma01g01777 287470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01777 881 Pfam Serine carboxypeptidase 584 877 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 Pfam Serine carboxypeptidase 172 494 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 Pfam Serine carboxypeptidase 510 577 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 Pfam Serine carboxypeptidase 60 154 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 Gene3D - 374 502 - -
Cma01g01777 881 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 584 879 - -
Cma01g01777 881 Gene3D alpha/beta hydrolase 582 880 IPR029058 -
Cma01g01777 881 Gene3D alpha/beta hydrolase 504 581 IPR029058 -
Cma01g01777 881 Gene3D alpha/beta hydrolase 54 348 IPR029058 -
Cma01g01777 881 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 584 879 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 47 496 - -
Cma01g01777 881 SUPERFAMILY alpha/beta-Hydrolases 55 494 IPR029058 -
Cma01g01777 881 SUPERFAMILY alpha/beta-Hydrolases 506 878 IPR029058 -
Cma01g01777 881 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 47 496 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 PRINTS Carboxypeptidase C serine protease (S10) family signature 849 862 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 153 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 PRINTS Carboxypeptidase C serine protease (S10) family signature 214 239 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 499 578 IPR001563 GO:0004185|GO:0006508
Cma01g01777 881 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 499 578 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01777 Cma12g00246 CCT
Cma01g01777 Cma09g00299 CST
Cma01g01777 Cma05g00116 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01777 Cma-Chr1:11913439 Cma17g01330 Cma-Chr17:8956352 4.90E-14 dispersed
Cma01g01777 Cma-Chr1:11913439 Cma09g00299 Cma-Chr9:1226342 1.31E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01777 K16296 - ini:109153033 782.711