Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01787 ATGAATCGGTGCTGCCCTTTTGGTTATCGTCATGTTGATGGAACGAATCGATGGATCCATCACAAGGGGTATCAGAGGGTGGGGTTCATAGCTTCTTTCTTGTGTGGCAATGCCCTGTCGTTTTGCTTCATTTTACAATACATTTCTTCGTTTGTATCATTCCAATCAAACCACATTGCCGACGAAACAAAAGAAATGGATGATGAGATTGTCGATGAACACTCATTCATTGACATTGGAAATGGAAGCAGCCCAGCAGAGGATGACTATGTGGATACGTTACTTGCAAAAGAGATGAGCTTCGGGTTTAGAAATGATAAATCTTTGGTGTTTGGGAACTGGGTCAAATGCGCCCGTTTGGAAGCAATTGCATGGATTCTCAAAACCAGAGCTGTGTTTGGATTCGGTTTCCAGACTGCTTATCTTTCAATTATGTACCTCGATCGCTTCCTTTCTCGGCGGGCCATTACTAACGAGAAGGTGTGGGCAGTTAGGTTACTGGCAGTGGCTTGTCTTTCTTTAGCGGCGAAAATGGAGGAATTGAAGGTTCCAGCTCTTTCAGAATTTCCAGTGGAAGATTTCAACTTTGAAAGCAAAGTAATCCAAAGAATGGAGCTTTTGGTGTTGAACACATTGGAATGGAAGATGGGTTCAACAACTCCCTTCTCTTTCATTCCTTATTTCATATCTAAACTATCCATTGAATCCCCACCAAGCAATAAGGTTTCTCAGATTGTTGAACTCATCTGGGTTTTGATTAGAGAAAGAAGCACAGAAAACCATCGGCCTTCTGTTGTAGCAGCAGCCACAGCCATTTTAGCAGCAATGGATGACAGATTAACAAGGAAAGCCTTGGAAATGAAGATGAATACCATTTCTCAATGTAGATATCTCGAAATAGAAGATGTGGTTTCATGTTACAATCTGATGCAAGAACTGAGATTGGAAAAATGCAGAGAAGAAGCAGAATGTTTGAAATCGCCAGATTTATCACCAACCCAAATGAAATCAATGGATTGTTCATCAAATTCTTCAGTAACATCAGCGATTGCATCAAAAAGAAAACGGCTAAACTTCAGTAACTGTGATGAAGAATGTGGTGTGGGTGAAGCAAAGCGGCTCCGTTAA 1128 41.22 MNRCCPFGYRHVDGTNRWIHHKGYQRVGFIASFLCGNALSFCFILQYISSFVSFQSNHIADETKEMDDEIVDEHSFIDIGNGSSPAEDDYVDTLLAKEMSFGFRNDKSLVFGNWVKCARLEAIAWILKTRAVFGFGFQTAYLSIMYLDRFLSRRAITNEKVWAVRLLAVACLSLAAKMEELKVPALSEFPVEDFNFESKVIQRMELLVLNTLEWKMGSTTPFSFIPYFISKLSIESPPSNKVSQIVELIWVLIRERSTENHRPSVVAAATAILAAMDDRLTRKALEMKMNTISQCRYLEIEDVVSCYNLMQELRLEKCREEAECLKSPDLSPTQMKSMDCSSNSSVTSAIASKRKRLNFSNCDEECGVGEAKRLR 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11955870 11961316 - CmaCh01G017870.1 Cma01g01787 287480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01787 375 SMART cyclin_7 124 210 IPR013763 -
Cma01g01787 375 ProSitePatterns Cyclins signature. 119 150 IPR006671 -
Cma01g01787 375 Gene3D - 118 217 - -
Cma01g01787 375 SUPERFAMILY Cyclin-like 86 216 IPR036915 -
Cma01g01787 375 PANTHER CYCLIN-D5-1 73 339 - -
Cma01g01787 375 Gene3D - 218 301 - -
Cma01g01787 375 CDD CYCLIN 119 209 IPR013763 -
Cma01g01787 375 Pfam Cyclin, N-terminal domain 118 216 IPR006671 -
Cma01g01787 375 Pfam Cyclin, C-terminal domain 220 314 IPR004367 -
Cma01g01787 375 PANTHER CYCLINS 73 339 IPR039361 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01787 K18811 CYCD5; cyclin D5, plant - csv:101209688 535.798
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01787 Cma09g00289 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01787 Cma-Chr1:11955870 Cma04g00298 Cma-Chr4:1480528 1.14E-39 dispersed
Cma01g01787 Cma-Chr1:11955870 Cma07g00653 Cma-Chr7:2850156 2.79E-63 wgd
Cma01g01787 Cma-Chr1:11955870 Cma09g00289 Cma-Chr9:1188529 2.11E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g655 Blo01g01496 Blo12g00986 Bda01g00589 Bda03g00183 Bpe02g00451 . . Bma01g02248 . . Cma01g01787 Cma09g00289 Car01g01395 . . Cpe06g00199 . . . . . . . . . . . . . . . . Cone7ag1340 . . Lsi04g01489 Csa04g02476 . . . . . . . . . . . Cmo01g01845 Cmo09g00280 . . . Car09g00243 . Cpe02g00219 Bhi09g03230 . . . . . . Cla05g02105 Cam05g2257 Cec05g2278 Cco05g2318 Clacu05g2254 Cmu05g2116 Cre05g2240 . . Chy07g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005430 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01787 Cma_Chr01 FPKM 2.773021 3.103164 0.931216 1.154833 1.464155 1.344746 1.231238 2.321509 2.245585 2.478524