Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01790 ATGGAATCTCGCAACAGGTTCCAGAACTTGGTCAAACATTTCTTCAGCATATGGAAAAGAACCACTCCACAATTAACAGAATCAACAGTTTTACGAAACAATGGATGGATTCATGTCGATGATGAACAATTTGATTATCTATCAACAATAGTTATGTGTATCCCAACATCTAATATTAAGGATCCATCTCTTTCTAAGACCCCTGTGATGAGCCACATATCAGAAGTAGATGAAGATGCTGCAATGTTGGAGTCGAAAATCTGTCAAATAAAGGATCTTTTCCCCGAGTATGGCAATGGATTTCTAGCAGCATGTCTGGTAGCTTATAATCAGAACCCGGAAGAAGTGATTCAACGAATCCTTGAGGGGACTCTTCATGCCGATCTTCAGTCCTTGGATACTTCCTTAGAAACAATGCCAGTGCCCAATTCTAGTACGACCGCTAATGGTAGGAATGACAAAGTTGCCTACACTGACCAAGTATCTGGGTGTAAAGAAGATATACCGATTGAAGGCCCTTCAGTTTCATCAGCTTCCGTTGTTAGATATGTTCGAAAGTCCAAAGATGGCATGCCGAACTCAGAGACCCTTGAGAGTAGAAATGAAGCTGATCCAGTGAGAACTGCAGCTTTAATTTCTCAATACGAGTATGACGATTCTTTTGATGATCTTGGTATTAGTATAGCAGAAACAGCTACAGAAGATAATGAAGACTTTGTGGGTCGAAAGCCGAGTTCAGATTTGGGTAACTCTTCGAACTCAACAACTGCAGGTTCAGCGCGAAGTGCTCCCAACCCGAAGTGGGGATCTAGAAGACAACCACAATTCTACGTCAAGGATGGTAAGAATTATAGTTGCAAAGTAGCAGGTTCGGTGGCAGTTTCCAATTCTGATGAGGCATCCTTAGTTACTCGAGCTCAAAAAGAACTAATTTATGGAATTGGCCGCGGAGGCAACTTGCCCCTCGGAGCAGTAAGAAAGCTGATAGATAAGAAAGCTGATAGAGTCGGAGCAGTAAGAAAGCTGATAGAGTCGGAGCAGGATAGCCCACCTGATGTTTCTGCAGTAGATCCAAGAGATAATGGACGGAAGTCCTGGGGAAGAGGAAGGAGGGAAGGTGGAAATGGAACAGCTCCAACCGTTCCAGAAGAACAAGGTAAACAACCAAATGTGGCTGAGACGGGCGGGAGGGGCGGCAACAGAGGCCGAGGAAGGAGGGGCGGCAACAGAGGCCGAGGAAGGAGGGGAGGGGGTAACCATCATAGGAAGGACAGAGCCATGAATAAGCATTTTGCTGGACTGCAGGAAATGGAAATATACGAAGAAAAACAATGCTTGAATCGAAACATGTCCATTAGTCATAGAGGGCTCCCTTTACACGGCAATAGCCTTTGA 1395 44.59 MESRNRFQNLVKHFFSIWKRTTPQLTESTVLRNNGWIHVDDEQFDYLSTIVMCIPTSNIKDPSLSKTPVMSHISEVDEDAAMLESKICQIKDLFPEYGNGFLAACLVAYNQNPEEVIQRILEGTLHADLQSLDTSLETMPVPNSSTTANGRNDKVAYTDQVSGCKEDIPIEGPSVSSASVVRYVRKSKDGMPNSETLESRNEADPVRTAALISQYEYDDSFDDLGISIAETATEDNEDFVGRKPSSDLGNSSNSTTAGSARSAPNPKWGSRRQPQFYVKDGKNYSCKVAGSVAVSNSDEASLVTRAQKELIYGIGRGGNLPLGAVRKLIDKKADRVGAVRKLIESEQDSPPDVSAVDPRDNGRKSWGRGRREGGNGTAPTVPEEQGKQPNVAETGGRGGNRGRGRRGGNRGRGRRGGGNHHRKDRAMNKHFAGLQEMEIYEEKQCLNRNMSISHRGLPLHGNSL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11967786 11969943 - CmaCh01G017900.1 Cma01g01790 287483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01790 464 MobiDBLite consensus disorder prediction 342 426 - -
Cma01g01790 464 MobiDBLite consensus disorder prediction 403 426 - -
Cma01g01790 464 Gene3D - 81 125 - -
Cma01g01790 464 MobiDBLite consensus disorder prediction 235 273 - -
Cma01g01790 464 CDD CUE_ASCC2 84 123 IPR041800 -
Cma01g01790 464 SUPERFAMILY UBA-like 82 140 IPR009060 GO:0005515
Cma01g01790 464 MobiDBLite consensus disorder prediction 245 269 - -
Cma01g01790 464 Pfam CUE domain 89 124 IPR003892 GO:0043130
Cma01g01790 464 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 29 434 - -
Cma01g01790 464 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 29 434 - -
Cma01g01790 464 SMART cue_7 82 124 IPR003892 GO:0043130
Cma01g01790 464 ProSiteProfiles CUE domain profile. 82 125 IPR003892 GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01790 K18667 ASCC2; activating signal cointegrator complex subunit 2 - csv:101221453 554.288
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01790 Cma09g00286 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01790 Cma-Chr1:11967786 Cma09g00286 Cma-Chr9:1169005 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0044470 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01790 Cma_Chr01 FPKM 1.670169 1.094266 4.336698 3.862773 3.966551 3.303051 3.924653 8.806782 8.337962 8.777891