Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01791 ATGGCTTCGGCGGAGCAGCCTCTCAAGAAGCGCCGGAACTACGTACCACCCGCATCAGAGCCACCGCAAACCCTAGCGCTGGACCAGACATCCGTCGCTCCACCGCCTCCTACTCCACCGCTGCTGTCCCAAGCCGAAATCCTCCTCAGGAGAAGGAACAGAGATGATATTAGAAGTGTCTATGACTGTTTTAAGCGAATTAGGTTTTTCCTCTCCCAGAAAGAGAAGGGCGCTCCCACACCTGATATTGAGCAGGCATATCTTTCTCTCATCACTGCTTCGAGAGGGTGCGCAAGTGTAAAGCGTATTGTAGCTGACTTTATTCCTCGGTATGCACCTCATTGTCCAACTGCTCTTGAAGCTGCAACAAAAGTTATCATCAATATACACAATCAGAGCTTGGAAATAATAACTAATGGGGAGGATGTTGATAATGTTGCATTTGAGACAGCTAGGGCTTGTATTATTGGGTTGGTTGATATTTGTGCTGCTGTAATATCTAAGGCACCTACGTCATCTGTCATCAGAGGCATTTGCTCTGAAGTCTTTCAGAATGTTTTCACCTTCTTTGTGTCATCTTTTGAGGGTAAAGACATCTTTCAGATTGTGGATGAAGAAGCTCTTAAAATTCAAGACTCTGCAGATTTTTTCACTGAGTTGAAGCAGAAATATACTGATGAAAATAGTTTGCCTGTGATTAAGCTTTTCAAGTTACGTGCTATCAGTTTCCTCTGGCTGTTTTTTCATTACCCTAAAAACTTAACTGCAGCTTGTTTTGAGCTTTTCAATATGTCTGCCGAGGGAATTCATAAGGATGGCCTGTATTTCCTGACTCAGATTATACTTGGTCTCGATGATGGTATCACCCATCATTTGGATAAAGGAAATGACAACAGAACAAGCCTCAAATGTTGCAAGGATGATGTCAAGGAGAAAGTTTCAGTCAGTAGCCTCATCTCTGTTGATGCGTCATCTGTTTCAAGGAACTGCATGTTGAGCTTGGTCCTTGGAAGCGATCAATCATTTCGAAACTGGATGTTTACACAGTATAAGAGGCTCTGTGACCTGCCGTCCTTTAGAGCTTTAGCAGATGTAAGATCTGCCCTGGAAGGAATTTTTGAATCATTTTCTGAGTTAATGAACAATGAAGATAGTCAAGTGAACATCGATGAGGAAATTTCTGATTCCTTAATGCATACCCGTCACAGGAGTGAAATTTCCATGGAACTCTCTGATAGAAAGAGAAAATTGAGTCATCGTGATTCCGTTGAAGATTGTGTCAACGACAAAGTTTCTGGTCAACATCGTTCCTCAATTCCTCTTGAAGGCAAGCACACCACATGTTCTGATTTGGATACTGGTAGCTTGAGACCCATGGCCTTTGAAGTTCGGGAGCCGGAAGGTTGGCTACATGGCAGTTTGCCCCAGTCACAGGATCCTTTGAGCAAGCACGATCATTTGACTTATGCAAAAACATCAGTAGACCTGCAGAGCAATTCTCTTGAATGTACAAAGAGTTCAACTGATGGGAATCAAGTTTCAAGTGTCGATCGCAACTTTCCTGCTCAGAGATCGTCTATTGGAGATGTCAATAATGATCTTGTGCCTCCTAGACATCAACTATCAGTGCCATGTAGTTCTACAACTTCTCAGAGTTTGTGGTTTTCTGATGGAGATCCATCAGCCATGGATATCTTCTCTGCCTCTAAACAATTATGGGTGGGTCTTTTAGGTCCTGATGCATCTGAAGCTCACATAAGGTATCAATTTGAGAGGTTTGGTTACATTGAACATTTTTTCTTCTTTCCATTAAAAAGGTTTGCAGTAGTGGAGTATAGTCACATCAATTATGCAATAAGGGCACGTGAATATATGCGTGGACAATTTCAGTGGTGTGTAAAATTCATGGATATTGGTTTAGGGACTAGGGGTTCCACCCACGGGGTTGCAATTGGTTCCAGTTTGCATGTTTATGTTGGAAATGTTTTGGGCCACTGGGTAAAGGATGAGATTCTGCATGAGACAAGGAAAGTGCTTAACAAGGGCCCATACGTGGTCTCTGATCTTAGCAGTGAGGGAGCATTGCTGATGGAATTTGAGATTCCCGAAGATGCTGCAGTTGTAATGGCGCATCTCAGACAACATCGTAGGGAGAAGTACATTCACTGGCCACCTTCAAATTCAGGACAAACTAACATCGCTGCTCCTTATTTAGATAGTGGAAGATCTTCTTGTGCCCCTACTGGTGGTAGCATCAGAAGTAACAATCCTTCAAACTTGTCCAGTAGTATGGTTGGGTCACCTCATGCTCCAATTGTCCCTGAGAGTCCTAACTTCAGGACAAGAATGTCAGAGCTATCTTCCTTGCTCTACACGCTGCGTGCAAAATACAACATCAATCAAAACTCGAGTTACTTTGAAAGCTACATGTCTGGAGGGTGCAACACTTCCATGAGGGAAGAAGACAGAACTCCTACTAACACTCTCTGGGTTTCTTTCCCAAATTTTAGTTCTCCTTTTGTCACCGATGAGGAGTTGATGAAGATCTGTAATCTTGCCATCACCAATACTGGGTCTGTTGTCAGGATGACTCGAGCAAGTGTACAGGTGGGCGGTGGTTGGTTTGTTGAGTGCAGTAGTGTGGATGCTGCAATCACGGTCTTGAAGAACCTCCGTGGTTGTCCTGGAATTTTCCTTCGAATAGAATTCAGTAAACCGGGAAGGTTCCATACAACACCTTTTCTGAGGAACCACGATAGTTGTGCTATGGAGCATCCATCTCCTAGAGTATTACATGAAAATCGTGCAATGCCTCAGCAAGGTGGGTATTCATATCAGTCAAACTGGGCTCCTTCTGGTCATACAGAGATATCTGAAATAGGTGTCAGAAAGACCGATGCTTACGAAAAAAGCGTGCTGATAGATCATCCACAAGGTGGCCACATAGTGTCTGGAAGTATTCCATGCTTGCCCATATCAACAATGGGGCCTCCCGCTCCACCACCTCCACCGCAGATTCAGCCACCTCCATTTGTTCAATCTCCATACCCTCCTCCAAATAGTTCTTGGGATGCAAGGGGTTTAAACCATCCTTTGCCTTTAAATTCAATCTCACCAGGTGTTATGCCTAATATATTCCCTGGCAATTCTGTTGCATGCCCTCCTTTTTTACCTGCTTCTGTGACACCACTTGCTCAGATACAAGGAGTTCCAATGCAGCAGCAGCATCTAGACCATGTTTTTCCCCATCCTGTTGTTCCGCCATCAATATCATCTCTTCCACCTCCCCAGCCCGAGATGCCTCCTCCCATGCCTCCATCTCGACCACCATTGCCTCACTCACAACCACCTAATATTCCTCCTCCACCCAGTTCTCCTCCGCCTCCACCTCTACCCCTAGCTGCCACTGGAACAAGTGAAGTGGAAAGTAGTAGCCAGCCTGTCCAGTATCAATGGCAAGGTGCCCTGTGTAAAAGCGGGGTTCAGTACTGTATAATTTTTGCAAAAAGAGTGGATTCACATACTTGCAAATACTTCAATGCTGGTCCAGAACCTTTCGAGTGGCCAACAAAATTAGATATGACCAAACGCACAGATTTCAGGCATGTGAAGTCGACATTCACTAGCACTTCACCAAATAAAAGGGAGATATGTCAGCTGATCCCATCTTCTGGTGGAGATCATAAAGGATTCCAAGATTTTGTATCATATTTGAAGCAAAGGGATTGTGCGGGAGTAATAAAGATACCGGCCACTAAATCGCTATGGACTAGGCTTCTCTTTATACTTCCATATTCACAGGACTCGTGTTCTCTTCTCTCAATTCCACCAGGTCCGCCAGATAGTCTGATTGGCTTGGTTCTTCCGAAAGAAACAAACTTCGAATGGCCAGTAATTCCTCGTCGTCGTCCTCCTCCCTCCGCTTGGCGCGCTCTTCTTCCTTTCCAATCACCAACGCACTCATCTGAATACAGAATGTCGAGTCGTTACAACCAAGATGGAAACAAGGGTTTAAGGAAAGACCAGAATAAGTACATCCCCAAGAATCAAAATCAATCTTCAAAACAACTCCTCAACCCTAAACCTACCCTCTCCGCTTCTTTCAGACATTCGCTTCCCAAGTCATCCGATTCTGCTGCTGTAAGCACTGCTGCCGCGCCTTCATTGAGTAGGATTCATATGGGTGTGAGTGGAGATTGGGACGAGGCCGTTGCCACTGGTCTTCGTGCTGAAGAAGGAGCGTTGGATCCGGTGGAATCTCAAAGAGTCGTAGACCTTTTGAATAGAGAGCTGTCTCGGCTGCTAAAGTTGAGTGCTAAAGAGTTTTGGACGGAAGTGGCTAGGGATACATCCTTGCATGAATTTCTCGATAGCTTCCTAAAATTCAGGAGTAGATGGTATGATTTTCCACATCGTGGAGCAAATGGAATAGTTGCAGGGGTCATCATTGGAGAGTTTGAATTATGCCGCCGTGTTTTCATGGTATTGTATCGCATGTCTTCCAATAGGGATCCTGGAGCGCGAGCTGCTGATAATCTCAGTATAAAATATCATGGAGTTCTCCTGCAGGGAAAGAAGTTGCTTGACCTTCCAAAGTTACTTGATATATGTGCTATATATAATCACGAGAATGAAGATCTAACTAGAATACTGAGTATTAAGGTTGAGAATGCTATAAAATCCCAGCTTAGTATTCATGAAAATTTACCATCAGTTATATCTCACTTCCTCAGCATTGTCTCTATGCATCAAAGAGGATATGCTTTGCAATACCCTGTTACGGCTAAAATTTTTGATCTCTTTGATGATAAGAAGGCACGAAAATTGGATGAAAGAAAGGAAGTTTATACGAAGGCATTGGATGCTTCTGGTAGGTTGTTCAGCTTAGGTACTCTCATCTCCACCAGTGGCCATGGGCACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATTGATTTTATCTATGATGCAATTGTCACTCTGGACTCTTTCGTTGCTGCATACAGACTGGCAGCCATATTCTTCTCCTCTGCTGTTGAAGTGAGCTGCGGAAATGAGGATTTACTCGGAACTCTTGCAAGGTTGCATGATATACTGCTTCCATCTTTACAGCAGGGATTCCAAATTGTCTTTGTGCCCCTAGAAGATGATATGGTGTCTAATGTTGCAAAAAGTTTGAAAATGCAAGCATTAAGAATTGTGAGTCTTGGTTGGAAACTGCTGGAAATTTGCTATCTAGGAGATGGAAGTGTTTGGAAAAGACTTCCCTGTTCCAGTCTCTATGAAGATGTTCCCAGCATCTGTTGA 5307 43.94 MASAEQPLKKRRNYVPPASEPPQTLALDQTSVAPPPPTPPLLSQAEILLRRRNRDDIRSVYDCFKRIRFFLSQKEKGAPTPDIEQAYLSLITASRGCASVKRIVADFIPRYAPHCPTALEAATKVIINIHNQSLEIITNGEDVDNVAFETARACIIGLVDICAAVISKAPTSSVIRGICSEVFQNVFTFFVSSFEGKDIFQIVDEEALKIQDSADFFTELKQKYTDENSLPVIKLFKLRAISFLWLFFHYPKNLTAACFELFNMSAEGIHKDGLYFLTQIILGLDDGITHHLDKGNDNRTSLKCCKDDVKEKVSVSSLISVDASSVSRNCMLSLVLGSDQSFRNWMFTQYKRLCDLPSFRALADVRSALEGIFESFSELMNNEDSQVNIDEEISDSLMHTRHRSEISMELSDRKRKLSHRDSVEDCVNDKVSGQHRSSIPLEGKHTTCSDLDTGSLRPMAFEVREPEGWLHGSLPQSQDPLSKHDHLTYAKTSVDLQSNSLECTKSSTDGNQVSSVDRNFPAQRSSIGDVNNDLVPPRHQLSVPCSSTTSQSLWFSDGDPSAMDIFSASKQLWVGLLGPDASEAHIRYQFERFGYIEHFFFFPLKRFAVVEYSHINYAIRAREYMRGQFQWCVKFMDIGLGTRGSTHGVAIGSSLHVYVGNVLGHWVKDEILHETRKVLNKGPYVVSDLSSEGALLMEFEIPEDAAVVMAHLRQHRREKYIHWPPSNSGQTNIAAPYLDSGRSSCAPTGGSIRSNNPSNLSSSMVGSPHAPIVPESPNFRTRMSELSSLLYTLRAKYNINQNSSYFESYMSGGCNTSMREEDRTPTNTLWVSFPNFSSPFVTDEELMKICNLAITNTGSVVRMTRASVQVGGGWFVECSSVDAAITVLKNLRGCPGIFLRIEFSKPGRFHTTPFLRNHDSCAMEHPSPRVLHENRAMPQQGGYSYQSNWAPSGHTEISEIGVRKTDAYEKSVLIDHPQGGHIVSGSIPCLPISTMGPPAPPPPPQIQPPPFVQSPYPPPNSSWDARGLNHPLPLNSISPGVMPNIFPGNSVACPPFLPASVTPLAQIQGVPMQQQHLDHVFPHPVVPPSISSLPPPQPEMPPPMPPSRPPLPHSQPPNIPPPPSSPPPPPLPLAATGTSEVESSSQPVQYQWQGALCKSGVQYCIIFAKRVDSHTCKYFNAGPEPFEWPTKLDMTKRTDFRHVKSTFTSTSPNKREICQLIPSSGGDHKGFQDFVSYLKQRDCAGVIKIPATKSLWTRLLFILPYSQDSCSLLSIPPGPPDSLIGLVLPKETNFEWPVIPRRRPPPSAWRALLPFQSPTHSSEYRMSSRYNQDGNKGLRKDQNKYIPKNQNQSSKQLLNPKPTLSASFRHSLPKSSDSAAVSTAAAPSLSRIHMGVSGDWDEAVATGLRAEEGALDPVESQRVVDLLNRELSRLLKLSAKEFWTEVARDTSLHEFLDSFLKFRSRWYDFPHRGANGIVAGVIIGEFELCRRVFMVLYRMSSNRDPGARAADNLSIKYHGVLLQGKKLLDLPKLLDICAIYNHENEDLTRILSIKVENAIKSQLSIHENLPSVISHFLSIVSMHQRGYALQYPVTAKIFDLFDDKKARKLDERKEVYTKALDASGRLFSLGTLISTSGHGHSKLQADFLEVIDFIYDAIVTLDSFVAAYRLAAIFFSSAVEVSCGNEDLLGTLARLHDILLPSLQQGFQIVFVPLEDDMVSNVAKSLKMQALRIVSLGWKLLEICYLGDGSVWKRLPCSSLYEDVPSIC 1768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11969994 11985840 - CmaCh01G017910.1 Cma01g01791 287484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01791 1768 MobiDBLite consensus disorder prediction 1 40 - -
Cma01g01791 1768 Gene3D - 561 644 IPR012677 -
Cma01g01791 1768 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1296 - -
Cma01g01791 1768 MobiDBLite consensus disorder prediction 1320 1371 - -
Cma01g01791 1768 MobiDBLite consensus disorder prediction 1087 1134 - -
Cma01g01791 1768 SUPERFAMILY RNA-binding domain, RBD 556 629 IPR035979 GO:0003676
Cma01g01791 1768 MobiDBLite consensus disorder prediction 745 768 - -
Cma01g01791 1768 Pfam SPOC domain 1143 1273 IPR012921 -
Cma01g01791 1768 MobiDBLite consensus disorder prediction 994 1017 - -
Cma01g01791 1768 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1296 - -
Cma01g01791 1768 MobiDBLite consensus disorder prediction 994 1024 - -
Cma01g01791 1768 MobiDBLite consensus disorder prediction 1080 1145 - -
Cma01g01791 1768 MobiDBLite consensus disorder prediction 745 766 - -
Cma01g01791 1768 MobiDBLite consensus disorder prediction 1344 1371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01791 K18667 ASCC2; activating signal cointegrator complex subunit 2 - csv:101209442 2111.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01791 Cma-Chr1:11969994 Cma09g00286 Cma-Chr9:1169005 1.75E-180 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01791 Cma_Chr01 FPKM 7.364773 7.306683 11.367316 11.291244 6.873426 6.477742 6.479874 19.84956 17.330011 17.666294