Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01792 ATGGCTCTTGAAGCTCTGAATTCTCCCACAACTCCATCGCCGGCGCTTCACTACGACGACCCGAGTCTCAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACCAAGCGTCCGCGGGGATTCGACAACCCTCCAACCGAGGAGGAGTATTTAGCGTTATGTCTCATCATGCTTGCTCGAGGCGGTGCCACCGCCTCTGACCCTGACCACCGACTTGCCTATGAAATTCCGATTCCGGCTCAGCCCATATCCGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGCGACAAGGCGTTTTCGTCTTACCAGGCTTTGGGTGGACATAAAGCGAGTCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCCACCATAACCACTTCCGCCACCGCTACCACCGCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGCCACAAGTCTTTTCCCACCGGCCAGGCCTTGGGTGGCCACAAGCGTTGCCACTACGACGGCGGAATTGGCAGCAACAACAACAACAACAACAACCACAACCAAACACACAGTCACAACAACAACCACACCGTGACATCGTCCGAAGGAGTTGGGTCGACCCACACACAGAGCCACAGCCACCGGGACTTCGACCTCAACCTCCCCGCCTTGCCGGAGCTATCTCCGGGATTCTTCAACTCTTCCGGCGACGAGGAGGTCCAAAGCCCATTACCTGTGAAGAAGCCTCGAATCTTAACAATTCCCAAAATCGAAATCACTCGGACATAA 771 53.96 MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATASDPDHRLAYEIPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDHSTSSTITTSATATTAVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGIGSNNNNNNNHNQTHSHNNNHTVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFNSSGDEEVQSPLPVKKPRILTIPKIEITRT 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11987981 11988751 + CmaCh01G017920.1 Cma01g01792 287485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01792 256 MobiDBLite consensus disorder prediction 171 216 - -
Cma01g01792 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Cma01g01792 256 PANTHER ZINC FINGER PROTEIN ZAT10 1 248 - -
Cma01g01792 256 MobiDBLite consensus disorder prediction 120 139 - -
Cma01g01792 256 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Cma01g01792 256 MobiDBLite consensus disorder prediction 1 18 - -
Cma01g01792 256 MobiDBLite consensus disorder prediction 171 202 - -
Cma01g01792 256 SUPERFAMILY beta-beta-alpha zinc fingers 90 165 IPR036236 -
Cma01g01792 256 SMART c2h2final6 90 112 IPR013087 -
Cma01g01792 256 SMART c2h2final6 143 165 IPR013087 -
Cma01g01792 256 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Cma01g01792 256 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 248 IPR044653 GO:0003700
Cma01g01792 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Cma01g01792 256 Gene3D Classic Zinc Finger 88 165 - -
Cma01g01792 256 MobiDBLite consensus disorder prediction 108 140 - -
Cma01g01792 256 Pfam C2H2-type zinc finger 143 167 - -
Cma01g01792 256 Pfam C2H2-type zinc finger 90 114 - -
Cma01g01792 256 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01792 Cma-Chr1:11987981 Cma06g00955 Cma-Chr6:6462347 4.57E-20 dispersed
Cma01g01792 Cma-Chr1:11987981 Cma11g01703 Cma-Chr11:11269468 1.24E-47 wgd
Cma01g01792 Cma-Chr1:11987981 Cma12g00593 Cma-Chr12:3095081 1.85E-79 wgd
Cma01g01792 Cma-Chr1:11987981 Cma19g00557 Cma-Chr19:6348134 2.03E-44 wgd
Cma01g01792 Cma-Chr1:11987981 Cma05g00147 Cma-Chr5:650418 1.44E-72 wgd
Cma01g01792 Cma-Chr1:11987981 Cma09g00282 Cma-Chr9:1160306 1.40E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34368 PF13912 zf-C2H2_6 1.60E-12 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01792 - - csv:101221218 422.165