Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01792 | ATGGCTCTTGAAGCTCTGAATTCTCCCACAACTCCATCGCCGGCGCTTCACTACGACGACCCGAGTCTCAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACCAAGCGTCCGCGGGGATTCGACAACCCTCCAACCGAGGAGGAGTATTTAGCGTTATGTCTCATCATGCTTGCTCGAGGCGGTGCCACCGCCTCTGACCCTGACCACCGACTTGCCTATGAAATTCCGATTCCGGCTCAGCCCATATCCGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGCGACAAGGCGTTTTCGTCTTACCAGGCTTTGGGTGGACATAAAGCGAGTCATAGAAAATCAGCTACAGGGGAAGACCACTCCACTTCCTCCACCATAACCACTTCCGCCACCGCTACCACCGCCGTCGGTGGGGGTAAATCCCACGAGTGCTCTATTTGCCACAAGTCTTTTCCCACCGGCCAGGCCTTGGGTGGCCACAAGCGTTGCCACTACGACGGCGGAATTGGCAGCAACAACAACAACAACAACAACCACAACCAAACACACAGTCACAACAACAACCACACCGTGACATCGTCCGAAGGAGTTGGGTCGACCCACACACAGAGCCACAGCCACCGGGACTTCGACCTCAACCTCCCCGCCTTGCCGGAGCTATCTCCGGGATTCTTCAACTCTTCCGGCGACGAGGAGGTCCAAAGCCCATTACCTGTGAAGAAGCCTCGAATCTTAACAATTCCCAAAATCGAAATCACTCGGACATAA | 771 | 53.96 | MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATASDPDHRLAYEIPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDHSTSSTITTSATATTAVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGIGSNNNNNNNHNQTHSHNNNHTVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFNSSGDEEVQSPLPVKKPRILTIPKIEITRT | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11987981 | 11988751 | + | CmaCh01G017920.1 | Cma01g01792 | 287485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01792 | 256 | MobiDBLite | consensus disorder prediction | 171 | 216 | - | - | |
Cma01g01792 | 256 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 143 | 165 | IPR013087 | - | |
Cma01g01792 | 256 | PANTHER | ZINC FINGER PROTEIN ZAT10 | 1 | 248 | - | - | |
Cma01g01792 | 256 | MobiDBLite | consensus disorder prediction | 120 | 139 | - | - | |
Cma01g01792 | 256 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 145 | 165 | IPR013087 | - | |
Cma01g01792 | 256 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cma01g01792 | 256 | MobiDBLite | consensus disorder prediction | 171 | 202 | - | - | |
Cma01g01792 | 256 | SUPERFAMILY | beta-beta-alpha zinc fingers | 90 | 165 | IPR036236 | - | |
Cma01g01792 | 256 | SMART | c2h2final6 | 90 | 112 | IPR013087 | - | |
Cma01g01792 | 256 | SMART | c2h2final6 | 143 | 165 | IPR013087 | - | |
Cma01g01792 | 256 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 92 | 112 | IPR013087 | - | |
Cma01g01792 | 256 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 1 | 248 | IPR044653 | GO:0003700 | |
Cma01g01792 | 256 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 90 | 117 | IPR013087 | - | |
Cma01g01792 | 256 | Gene3D | Classic Zinc Finger | 88 | 165 | - | - | |
Cma01g01792 | 256 | MobiDBLite | consensus disorder prediction | 108 | 140 | - | - | |
Cma01g01792 | 256 | Pfam | C2H2-type zinc finger | 143 | 167 | - | - | |
Cma01g01792 | 256 | Pfam | C2H2-type zinc finger | 90 | 114 | - | - | |
Cma01g01792 | 256 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01792 | Cma-Chr1:11987981 | Cma06g00955 | Cma-Chr6:6462347 | 4.57E-20 | dispersed | |
Cma01g01792 | Cma-Chr1:11987981 | Cma11g01703 | Cma-Chr11:11269468 | 1.24E-47 | wgd | |
Cma01g01792 | Cma-Chr1:11987981 | Cma12g00593 | Cma-Chr12:3095081 | 1.85E-79 | wgd | |
Cma01g01792 | Cma-Chr1:11987981 | Cma19g00557 | Cma-Chr19:6348134 | 2.03E-44 | wgd | |
Cma01g01792 | Cma-Chr1:11987981 | Cma05g00147 | Cma-Chr5:650418 | 1.44E-72 | wgd | |
Cma01g01792 | Cma-Chr1:11987981 | Cma09g00282 | Cma-Chr9:1160306 | 1.40E-146 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34368 | PF13912 | zf-C2H2_6 | 1.60E-12 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01792 | - | - | csv:101221218 | 422.165 |