Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01793 ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCCCAAGGCAACGCCACCTTATTTCTTGCTAAATTCTTCGGCCGCAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCCCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGTTGAGACGGTTCTTAGGGGCGGAGTTCCCCGGGAAAACCTCGGAATCGAATTTTCTGGGAATCCCACGGCGGAGACAGAATCCTCTCTCAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAACATTCAACTTTACCCTTCTAGTCAGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACTGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGAGGAGTCGGTGATGACTAGCTTTGGAAGCGCGGATCATAGAGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGA 621 52.5 MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPTAETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEESVMTSFGSADHRDGDRRKERKLLNLFI 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11993723 11995070 + CmaCh01G017930.1 Cma01g01793 287486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01793 206 MobiDBLite consensus disorder prediction 160 193 - -
Cma01g01793 206 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cma01g01793 206 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Cma01g01793 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 206 - -
Cma01g01793 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 206 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01793 Cma09g00281 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01793 Cma-Chr1:11993723 Cma14g00811 Cma-Chr14:4107612 1.10E-48 dispersed
Cma01g01793 Cma-Chr1:11993723 Cma03g00932 Cma-Chr3:6676809 6.26E-65 wgd
Cma01g01793 Cma-Chr1:11993723 Cma07g00659 Cma-Chr7:2878344 9.82E-64 wgd
Cma01g01793 Cma-Chr1:11993723 Cma09g00281 Cma-Chr9:1154490 7.56E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34369 PF03195 LOB 5.10E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01793 - - cmax:111480976 416.001