Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01793 | ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCCCAAGGCAACGCCACCTTATTTCTTGCTAAATTCTTCGGCCGCAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCCCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGTTGAGACGGTTCTTAGGGGCGGAGTTCCCCGGGAAAACCTCGGAATCGAATTTTCTGGGAATCCCACGGCGGAGACAGAATCCTCTCTCAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAACATTCAACTTTACCCTTCTAGTCAGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACTGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGAGGAGTCGGTGATGACTAGCTTTGGAAGCGCGGATCATAGAGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGA | 621 | 52.5 | MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPTAETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEESVMTSFGSADHRDGDRRKERKLLNLFI | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11993723 | 11995070 | + | CmaCh01G017930.1 | Cma01g01793 | 287486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01793 | 206 | MobiDBLite | consensus disorder prediction | 160 | 193 | - | - | |
Cma01g01793 | 206 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Cma01g01793 | 206 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 101 | IPR004883 | - | |
Cma01g01793 | 206 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 39-LIKE | 1 | 206 | - | - | |
Cma01g01793 | 206 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 206 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01793 | Cma09g00281 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01793 | Cma-Chr1:11993723 | Cma14g00811 | Cma-Chr14:4107612 | 1.10E-48 | dispersed | |
Cma01g01793 | Cma-Chr1:11993723 | Cma03g00932 | Cma-Chr3:6676809 | 6.26E-65 | wgd | |
Cma01g01793 | Cma-Chr1:11993723 | Cma07g00659 | Cma-Chr7:2878344 | 9.82E-64 | wgd | |
Cma01g01793 | Cma-Chr1:11993723 | Cma09g00281 | Cma-Chr9:1154490 | 7.56E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34369 | PF03195 | LOB | 5.10E-24 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01793 | - | - | cmax:111480976 | 416.001 |