Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01798 ATGAGCTGGTGGTGGGCCGGAGCAATCGGCGCTGCTAAGAAGAAATTTGAAGAAGATGAACAACCGAGGAGCTTTGAGAGCGTAGCATTGGTGATCGGCATTACAGGCATCGTCGGCAACAGCCTTGCCGAGATTCTCCCTCTTTCCGACACTCCCGGCGGTCCGTGGAAGGTGTACGGCGTCGCTCGGAGGCCGCGGCCAAACTGGAACGCCGACCATCCCATCGAATACATCCAATGCGATGTCTCCGATCCGGAAGACGCCGAAGCCAAACTCTCGAAGCTCACTGATGTGACTCATGTGTTCTATGTTACATGGACCAATCTACCCACAGAGATCGAGAACTGTGATGTCAACGGCAAAATGCTTCGCAACGTGTTGCGATCGGTGATTCCGAACGCGCCAAATCTCCGCCATATCTGCCTTCAAACAGGTACGAAGCACTACATCGGATCGTTCGAGAACATCATCGATAATCCGTCGCATCGGCACGATCCGCCTTTCACGGAGGATATGCCTCGATTGGATTCCCCAAATTTCTATTACACTCAAGAAGATTTGTTGTTCGAAGAGATCGAAAAGAGTCAGAAAAAGGATCTGACATGGGCGGTGATCCGACCCAACACGATCTTCGGGTTTTCCCCTTTCAGCTTGATGAACATCGTCGGAACCCTATGCACGTACGCCGCCATATGCAAGCACGAGGGACGTCCGTTGAAATTCCCCGGCACGAAATCAGCTTGGGAGGGTTACTCAGTGGTCTCCGACGCAGATCTGATAGCGGAGCAGCACATATGGACAGCGGTGGATCCATACGCAAAGAACGAGGCGTTTAACTGCAGCAATGGCGATGTATTCAAGTGGAAACACTTCTGGAAGGTTTTGGCGGAGCAGTTCAACATCGAGGATTATGGGTTCGAAGAGGGTGAGAGATTGCCGCTGGGAGAGTTGATGAAGGGGAAAAATGAAGTGTGGGAAGAAATTGTGAAGGAGAATCAGTTGCAACCAACAAAATTGGAGGATGTTGCTAATTGGTGGCATACAGATATAGCTTTGAGCGCTTCTGGTAACATAGATAGTATGAACAAGAGCAAGGAGCATGGATTCTTGGGCTTCAGAAACTCCAAGAACTCCTTCATTTCTTGGATCGACAAGGTTAAGGCTTTCAAAATCGTGCCCTGA 1182 50.17 MSWWWAGAIGAAKKKFEEDEQPRSFESVALVIGITGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPNWNADHPIEYIQCDVSDPEDAEAKLSKLTDVTHVFYVTWTNLPTEIENCDVNGKMLRNVLRSVIPNAPNLRHICLQTGTKHYIGSFENIIDNPSHRHDPPFTEDMPRLDSPNFYYTQEDLLFEEIEKSQKKDLTWAVIRPNTIFGFSPFSLMNIVGTLCTYAAICKHEGRPLKFPGTKSAWEGYSVVSDADLIAEQHIWTAVDPYAKNEAFNCSNGDVFKWKHFWKVLAEQFNIEDYGFEEGERLPLGELMKGKNEVWEEIVKENQLQPTKLEDVANWWHTDIALSASGNIDSMNKSKEHGFLGFRNSKNSFISWIDKVKAFKIVP 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12005164 12006799 - CmaCh01G017980.1 Cma01g01798 287491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01798 393 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE-LIKE 1 393 - -
Cma01g01798 393 Pfam NAD dependent epimerase/dehydratase family 29 256 IPR001509 -
Cma01g01798 393 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE 1 393 - -
Cma01g01798 393 CDD 5beta-POR_like_SDR_a 28 337 - -
Cma01g01798 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 302 IPR036291 -
Cma01g01798 393 Gene3D - 25 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01798 K22419 VEP1; Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3] - csv:101204090 703.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01798 Cma09g00274 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01798 Cma-Chr1:12005164 Cma13g00069 Cma-Chr13:553000 1.63E-69 dispersed
Cma01g01798 Cma-Chr1:12005164 Cma09g00274 Cma-Chr9:1134569 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g678 Blo01g01500 . Bda01g00582 . . . . . . . Cma01g01798 Cma09g00274 Car01g01404 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01501 . . . . . . . . . . . Sed13g1794 Cmo01g01857 Cmo09g00270 . . . Car09g00229 . Cpe02g00210 Bhi09g03248 Tan01g4716 Cmetu04g1405 . Hepe01g1814 Mch11g0346 . Cla05g02092 Cam05g2245 Cec05g2264 Cco05g2305 Clacu05g2242 Cmu05g2105 Cre05g2228 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005993 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01798 Cma_Chr01 FPKM 40.146812 45.703072 62.622375 61.754936 30.147671 33.565872 28.404291 152.524261 143.049103 133.089508