Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01803 ATGGCGGATAAGGAGAATATATTTCGACTCACTCGGGGTTCTAAGAAGAGGTCCGCCGAGGCTGCTACCCCCCACGATCGCTCTGCTAACAAGAGGAGAGTCGTTCTCGGAGAGCTTCCTATTTTACAGAATGCTACTTCTTCTTCCGTCGATCGGACTTCCAGGTCCAGACCCAGCAGGCACAGACGGAGACTCAAATCGAGGGATACAGCGGAGACAAGTGCTGCCGCTCAAATTAATACGCTTCCGGATGCTGATGTCAAGCTATCGGATGAGGGCAATTCCGAAGACCCGCAAATGTGCACGGTTTTCGCCTCTGATATTTATGAGTACCTTCGCGCCATGGAGACTGATCCACGAAGAAGACCTTTACCAGATTACATCGGGAGGGTACAAAAGGATATAAGTGCCAATATGAGGGGGATTCTGGTGGATTGGTTGGTTGAAGTTGCAAAAGAATACAAGCTTGTTTCAGACACTCTTTACCTCTCTATTTCATATGTTGACAGATACTTATCTCTAAACGCAATCAGCAGGCAAAAACTTCAATTGTTGGGGGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCGCATGTTGAAGAATTTGTTTATATAACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCAGATATATTGAAATCACTGGAATTTGAACTTGGAAGTCCCACAATAAAGACATTTTTAAGGCAAGTGCAGTGGAGATTCACAATGATTGCTCAAGAGACTTACGAATTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGTCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCAAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATACAAGCCAGCTGATATGAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACATAAGTACAAATTTGTGTCTATCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1137 42.66 MADKENIFRLTRGSKKRSAEAATPHDRSANKRRVVLGELPILQNATSSSVDRTSRSRPSRHRRRLKSRDTAETSAAAQINTLPDADVKLSDEGNSEDPQMCTVFASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAKEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGSPTIKTFLRQVQWRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKYKFVSIMPSPPEIPIPYFEDVRI 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 12023071 12025280 + CmaCh01G018030.1 Cma01g01803 287496
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01803 378 Pfam Cyclin, C-terminal domain 238 364 IPR004367 -
Cma01g01803 378 CDD CYCLIN 139 228 IPR013763 -
Cma01g01803 378 Gene3D - 107 360 - -
Cma01g01803 378 ProSitePatterns Cyclins signature. 140 171 IPR006671 -
Cma01g01803 378 SUPERFAMILY Cyclin-like 96 235 IPR036915 -
Cma01g01803 378 MobiDBLite consensus disorder prediction 1 33 - -
Cma01g01803 378 CDD CYCLIN 238 333 IPR013763 -
Cma01g01803 378 PANTHER CYCLINS 24 376 IPR039361 -
Cma01g01803 378 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Cma01g01803 378 SMART cyclin_7 145 229 IPR013763 -
Cma01g01803 378 SMART cyclin_7 242 334 IPR013763 -
Cma01g01803 378 MobiDBLite consensus disorder prediction 1 85 - -
Cma01g01803 378 PIRSF Cyclin_A_B_D_E 3 369 IPR039361 -
Cma01g01803 378 PANTHER CYCLIN-A3-1-RELATED 24 376 - -
Cma01g01803 378 SUPERFAMILY Cyclin-like 238 367 IPR036915 -
Cma01g01803 378 Gene3D - 121 236 - -
Cma01g01803 378 SMART Cyclin_C_2 238 365 IPR004367 -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01803 Cma-Chr1:12023071 Cma15g00658 Cma-Chr15:3138809 1.53E-105 dispersed
Cma01g01803 Cma-Chr1:12023071 Cma11g01716 Cma-Chr11:11366810 1.60E-107 wgd
Cma01g01803 Cma-Chr1:12023071 Cma12g00577 Cma-Chr12:3019501 1.96E-165 wgd
Cma01g01803 Cma-Chr1:12023071 Cma19g00567 Cma-Chr19:6402662 1.16E-100 wgd
Cma01g01803 Cma-Chr1:12023071 Cma05g00158 Cma-Chr5:686175 2.35E-169 wgd
Cma01g01803 Cma-Chr1:12023071 Cma09g00270 Cma-Chr9:1114199 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01803 K06627 - csv:101207493 637.491