Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01803 | ATGGCGGATAAGGAGAATATATTTCGACTCACTCGGGGTTCTAAGAAGAGGTCCGCCGAGGCTGCTACCCCCCACGATCGCTCTGCTAACAAGAGGAGAGTCGTTCTCGGAGAGCTTCCTATTTTACAGAATGCTACTTCTTCTTCCGTCGATCGGACTTCCAGGTCCAGACCCAGCAGGCACAGACGGAGACTCAAATCGAGGGATACAGCGGAGACAAGTGCTGCCGCTCAAATTAATACGCTTCCGGATGCTGATGTCAAGCTATCGGATGAGGGCAATTCCGAAGACCCGCAAATGTGCACGGTTTTCGCCTCTGATATTTATGAGTACCTTCGCGCCATGGAGACTGATCCACGAAGAAGACCTTTACCAGATTACATCGGGAGGGTACAAAAGGATATAAGTGCCAATATGAGGGGGATTCTGGTGGATTGGTTGGTTGAAGTTGCAAAAGAATACAAGCTTGTTTCAGACACTCTTTACCTCTCTATTTCATATGTTGACAGATACTTATCTCTAAACGCAATCAGCAGGCAAAAACTTCAATTGTTGGGGGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCGCATGTTGAAGAATTTGTTTATATAACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCAGATATATTGAAATCACTGGAATTTGAACTTGGAAGTCCCACAATAAAGACATTTTTAAGGCAAGTGCAGTGGAGATTCACAATGATTGCTCAAGAGACTTACGAATTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGTCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCAAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATACAAGCCAGCTGATATGAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACATAAGTACAAATTTGTGTCTATCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA | 1137 | 42.66 | MADKENIFRLTRGSKKRSAEAATPHDRSANKRRVVLGELPILQNATSSSVDRTSRSRPSRHRRRLKSRDTAETSAAAQINTLPDADVKLSDEGNSEDPQMCTVFASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAKEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGSPTIKTFLRQVQWRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADMKDCVLLVHDLYLSRRGGALAAIREKYKQHKYKFVSIMPSPPEIPIPYFEDVRI | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 12023071 | 12025280 | + | CmaCh01G018030.1 | Cma01g01803 | 287496 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01803 | 378 | Pfam | Cyclin, C-terminal domain | 238 | 364 | IPR004367 | - | |
| Cma01g01803 | 378 | CDD | CYCLIN | 139 | 228 | IPR013763 | - | |
| Cma01g01803 | 378 | Gene3D | - | 107 | 360 | - | - | |
| Cma01g01803 | 378 | ProSitePatterns | Cyclins signature. | 140 | 171 | IPR006671 | - | |
| Cma01g01803 | 378 | SUPERFAMILY | Cyclin-like | 96 | 235 | IPR036915 | - | |
| Cma01g01803 | 378 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cma01g01803 | 378 | CDD | CYCLIN | 238 | 333 | IPR013763 | - | |
| Cma01g01803 | 378 | PANTHER | CYCLINS | 24 | 376 | IPR039361 | - | |
| Cma01g01803 | 378 | Pfam | Cyclin, N-terminal domain | 107 | 235 | IPR006671 | - | |
| Cma01g01803 | 378 | SMART | cyclin_7 | 145 | 229 | IPR013763 | - | |
| Cma01g01803 | 378 | SMART | cyclin_7 | 242 | 334 | IPR013763 | - | |
| Cma01g01803 | 378 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Cma01g01803 | 378 | PIRSF | Cyclin_A_B_D_E | 3 | 369 | IPR039361 | - | |
| Cma01g01803 | 378 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 376 | - | - | |
| Cma01g01803 | 378 | SUPERFAMILY | Cyclin-like | 238 | 367 | IPR036915 | - | |
| Cma01g01803 | 378 | Gene3D | - | 121 | 236 | - | - | |
| Cma01g01803 | 378 | SMART | Cyclin_C_2 | 238 | 365 | IPR004367 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01803 | Cma05g00158 | CCT | |
| Cma01g01803 | Cma12g00577 | CCT | |
| Cma01g01803 | Cma12g00577 | ECH | |
| Cma01g01803 | Cma05g00158 | ECH | |
| Cma01g01803 | Cma09g00270 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01803 | Cma-Chr1:12023071 | Cma15g00658 | Cma-Chr15:3138809 | 1.53E-105 | dispersed | |
| Cma01g01803 | Cma-Chr1:12023071 | Cma11g01716 | Cma-Chr11:11366810 | 1.60E-107 | wgd | |
| Cma01g01803 | Cma-Chr1:12023071 | Cma12g00577 | Cma-Chr12:3019501 | 1.96E-165 | wgd | |
| Cma01g01803 | Cma-Chr1:12023071 | Cma19g00567 | Cma-Chr19:6402662 | 1.16E-100 | wgd | |
| Cma01g01803 | Cma-Chr1:12023071 | Cma05g00158 | Cma-Chr5:686175 | 2.35E-169 | wgd | |
| Cma01g01803 | Cma-Chr1:12023071 | Cma09g00270 | Cma-Chr9:1114199 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01803 | K06627 | - | csv:101207493 | 637.491 |