Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01805 ATGCATTCAACCATGGAAGAGACGTTGTTGTTGTTCTCTAATTTTGAGGTCCTATTGTTGATCCTCGTTTTAGCTCTCCTGATGATTTTCAAATTCAGAAAAGCGGACCACAAAAATCTCCCACCCGGTCCACCTTCCCTTCCAGTAATCGGCCACCTCCATCTTCTAAAAGAGCCATTCCACCAAATGCTGCAAGATCTCTCGCAAAAGTACGGTCCAATCCTGTCGCTGTCACTCGGTTTCCGCCCCGTGGTGGTTGTTTCCTCCCCCGCCGCCGCCCAGGAGTGCTTTTCCAAAAACGACATCATATTTGCCAGCCGCCCTCGTATGATTTCCGGGAAGATTCTCAATTATGACTACACTGCCGTTGGTGCTACTGCATACGGCCAGCACTGGCGCATCATGCGCCGCATAGCTACCACTGAGCTACTCTCCACGCACCGTCTCAACGCATTAATTAACATCCGACAACAGGAGGTTAAATTATGGCTCAAAAGTTTATACCGAATTACGGGCAAAAATAATGTCCGAGTGGAGATAAGGTCCAAATTGACGGAGCTGTCTTTCAATATTGCGCTGATGTTGATGGTTGGGAAGCGTTACTTTGGAGATGAAGCCGTGGATGATAGTGAGGAGGCGAGGGAGTTGAAGAACACAATGAAGCAAGTTCCTCTACTGAGCGGAGCATCGTATCCAGCTGACTTCTTGTCGGTTTTGAAATTGGTGGATTATCAAGGATTCAGGAAGAAGTTGGCAAAAGTGAGGGTGGATGGCGATGCTTTTGCACAAAGTTTGATTGATGAACGTCGGAACAAGAAAGCTGATCACAATGAACGAAAGACCATGATTGATAGTCTGCTGTCCATGCAACAAATGGAACCTGAATATTACAAGGACCATATCATCAAGGGCCAATTCTTGACTCTTCTGGCTGCGGGAACTGACACAACAGCGGGAACACTAGAGTGGGCGTTGTCGCTACTCCTCAACCATCCGACCGCGATGAAGAAAGCATGGACTGAGATAAACGAGCATGTTGGGGACGAACGGCTGGTAGAGGAGATGGATCTTAACCAGCTACACTATCTTCAAGGCATAATCAACGAGACCTATCGCCTATTTCCAGCGCTTCCAATATTGGTTCCACGAGAATCATCTGAAGACTGCACAATTGGAGGGTTTGACGTTCCGATAGGAACCATGTTAGTGGTGAATGCATGGGCCATCCATCGAGACCCAAAAGTGTGGGAAGATCCCAATAGCTTCCGACCAGAGAGGTTTAAAGAGGGCGAGAGTGTGGAAGTAAGTAAATTGTTGCCATTTGGGATGGGGAGAAGGGCGTGTCCAGGGGCTGGCCTTGCGCACAGAGTGGTGGGGTTGGCGCTGGCCACTCTGATTCAGTGCTTTGAGTGGGAGAGACTCGACAACAAGGAAGTAGACTTGACTCCTGGAATTGGACTCACCATGCCCAAATCCAGCCCTTTGGTAGCTATGTTCAAACCTCGTGCTCCCATCACTCATTTACTATCACAGCTTTGA 1539 48.41 MHSTMEETLLLFSNFEVLLLILVLALLMIFKFRKADHKNLPPGPPSLPVIGHLHLLKEPFHQMLQDLSQKYGPILSLSLGFRPVVVVSSPAAAQECFSKNDIIFASRPRMISGKILNYDYTAVGATAYGQHWRIMRRIATTELLSTHRLNALINIRQQEVKLWLKSLYRITGKNNVRVEIRSKLTELSFNIALMLMVGKRYFGDEAVDDSEEARELKNTMKQVPLLSGASYPADFLSVLKLVDYQGFRKKLAKVRVDGDAFAQSLIDERRNKKADHNERKTMIDSLLSMQQMEPEYYKDHIIKGQFLTLLAAGTDTTAGTLEWALSLLLNHPTAMKKAWTEINEHVGDERLVEEMDLNQLHYLQGIINETYRLFPALPILVPRESSEDCTIGGFDVPIGTMLVVNAWAIHRDPKVWEDPNSFRPERFKEGESVEVSKLLPFGMGRRACPGAGLAHRVVGLALATLIQCFEWERLDNKEVDLTPGIGLTMPKSSPLVAMFKPRAPITHLLSQL 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12029068 12031631 + CmaCh01G018050.1 Cma01g01805 287498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01805 512 Pfam Cytochrome P450 41 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 SUPERFAMILY Cytochrome P450 41 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 Gene3D Cytochrome P450 26 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01805 512 PANTHER CYTOCHROME P450 FAMILY PROTEIN 16 507 - -
Cma01g01805 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Cma01g01805 512 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 16 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01805 K13260 CYP81E; isoflavone/4'-methoxyisoflavone 2'-hydroxylase [EC:1.14.14.90 1.14.14.89] - csv:101207242 772.696
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01805 Cma09g00267 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01805 Cma-Chr1:12029068 Cma17g01387 Cma-Chr17:9243802 6.74E-173 dispersed
Cma01g01805 Cma-Chr1:12029068 Cma09g00267 Cma-Chr9:1109388 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g698 Blo01g01509 . . . . . . . . . Cma01g01805 Cma09g00267 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01511 Csa04g02453 . . . . . . . . . . . Cmo01g01862 . . . . . . Cpe02g00204 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01805 Cma_Chr01 FPKM 13.152161 17.068832 95.613472 95.271751 7.926849 7.297869 6.416856 0.0 0.0 0.0