Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01819 ATGGGGACCTACCGATCCTCGCAGATTATGCCTCTCCTCTTCTTCGTCATCATAACTTTATCATCGGCCTTGGCTTTGGCTTCTTCGATCATCTCCGAGAGGACGGATGAGGAGGTGATGGCGCTCTACGACCAGTGGCGTGCTAAGCATGGGAAGTTGCGGAACGGCCTCAGAGGACAGCGGGATGATCGATTCGAGATCTTCAAGGATAATCTTAAGTACATCGACGAAATCAACGCCCAAAATTTGCCCTACCGTTTAGGTTTGAACGTATTTGCAGATCTGACCAATGCCGAGTACCGATCCAAGTACTTGGGAACCAGATTCGCCGCTGGTTCAAGGAGAAACAAGACGAGCAGTCGCTATCAGCCTCGCCTTGGGGATAAACTTCCCGAATCTGTCGATTGGAGGGAGAAAGGAGCCGTCGTTCCCGTTAAGGACCAGGGAAGCTGCGGGAGTTGCTGGGCGTTCTCAACTATAGCTGCTGTGGAAGGCATAAACCAGGTTGTTACAGGCGACTTGGTAAGTTTATCAGAACAGGAGCTGGTGGATTGTGACACTTCTTATAACGAAGGTTGCAATGGAGGCTTAATGGATTATGCCTTTGAATTCATCATCAACAACGGTGGCATTGACACCGAGGAAGATTATCCTTACAACGGCTTTGATAGCTCCTGCATCCAATATAAGAAAAATGCTAGGGTCGTTTCAATTGATGGCTATGAAGACGTTCCTGTAAACGATGAGAAAGCACTGCAAAAAGCTGCCGCTAATCAGGTTGTGGCTGTTGCCATCGAAGGAGGTGGTAGAAGTTTCCAGTTATATCAATCGGGTATATTCACTGGAAAGTGTGGAACAAATTTGGACCATGGTGTTAACGTAGTTGGATACGGGTCTGAAGGGGGCGTTGATTACTGGATTGTGAGAAACTCATGGGGCGGGAGCTGGGGTGAACATGGCTACATCAGGATGCAACGTAACATTGCTTCCTCAACAGGTCTCTGTGGAATTGCAATGGAACCTTCCTACCCCATTAAAAAGGGACCAAACCCACCAAATCCAGGCCCAACTCCTCCAAGTCCGGTGAAACCACCATCTGTATGCGATGAATATTACACCTGTCCCGCCGCTGAAACCTGCTGCTGCATCTTTGAGTTCTCAAACCTGTGCCTTGAATGGGGATGCTGCCCACTTGAAAGCGCCACCTGCTGTGATGACCATTACAGCTGCTGCCCCCACGACTATCCCATCTGTAACGTCCGTGCTGGAACCTGCTTGAAGGGGAAGAATGATGTTTTCGGAGTGAAGGCGATGAGGCGCACTACAGCTGCAGCCAAACCATCGTGGGCATTCGGAGATGTGTCTGTTGGAAAGAGCAGTGCTTAA 1386 49.42 MGTYRSSQIMPLLFFVIITLSSALALASSIISERTDEEVMALYDQWRAKHGKLRNGLRGQRDDRFEIFKDNLKYIDEINAQNLPYRLGLNVFADLTNAEYRSKYLGTRFAAGSRRNKTSSRYQPRLGDKLPESVDWREKGAVVPVKDQGSCGSCWAFSTIAAVEGINQVVTGDLVSLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYNGFDSSCIQYKKNARVVSIDGYEDVPVNDEKALQKAAANQVVAVAIEGGGRSFQLYQSGIFTGKCGTNLDHGVNVVGYGSEGGVDYWIVRNSWGGSWGEHGYIRMQRNIASSTGLCGIAMEPSYPIKKGPNPPNPGPTPPSPVKPPSVCDEYYTCPAAETCCCIFEFSNLCLEWGCCPLESATCCDDHYSCCPHDYPICNVRAGTCLKGKNDVFGVKAMRRTTAAAKPSWAFGDVSVGKSSA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12067366 12071492 - CmaCh01G018190.1 Cma01g01819 287512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01819 461 Gene3D Cysteine proteinases 21 347 - -
Cma01g01819 461 SMART GRAN_2 368 425 IPR000118 -
Cma01g01819 461 SMART pept_c1 130 345 IPR000668 GO:0006508|GO:0008234
Cma01g01819 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Cma01g01819 461 SMART Inhibitor_I29_2 43 100 IPR013201 -
Cma01g01819 461 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508|GO:0008234
Cma01g01819 461 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508|GO:0008234
Cma01g01819 461 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508|GO:0008234
Cma01g01819 461 Pfam Granulin 379 426 IPR000118 -
Cma01g01819 461 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508|GO:0008234
Cma01g01819 461 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 375 - -
Cma01g01819 461 Gene3D Granulin 365 428 IPR037277 -
Cma01g01819 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Cma01g01819 461 Pfam Cathepsin propeptide inhibitor domain (I29) 44 100 IPR013201 -
Cma01g01819 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Cma01g01819 461 PANTHER CYSTEINE PROTEASE 26 375 - -
Cma01g01819 461 SUPERFAMILY Cysteine proteinases 35 345 IPR038765 -
Cma01g01819 461 SUPERFAMILY Granulin repeat 365 399 - -
Cma01g01819 461 CDD Peptidase_C1A 131 344 IPR039417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01819 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101217590 786.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01819 Cma09g00255 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01819 Cma-Chr1:12067366 Cma12g00438 Cma-Chr12:2287015 1.19E-134 dispersed
Cma01g01819 Cma-Chr1:12067366 Cma11g01732 Cma-Chr11:11510182 0 wgd
Cma01g01819 Cma-Chr1:12067366 Cma03g00959 Cma-Chr3:6826020 1.98E-150 wgd
Cma01g01819 Cma-Chr1:12067366 Cma07g00688 Cma-Chr7:3024117 7.59E-151 wgd
Cma01g01819 Cma-Chr1:12067366 Cma09g00255 Cma-Chr9:1072704 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01819 Cma_Chr01 FPKM 266.336914 278.531525 201.095825 193.963791 185.80719 204.929764 177.041 58.467419 53.475895 50.39135