Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01820 | ATGCTGCTTCTCAAGAACAATATGGCTGTGGAGTTTATGGTGGGTTTTGGGGATGCTGCTGCTAATTTCACGCCCAGTATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTTCATACTTTCCTCACCTTGGTGTCTCATACTCCTAATCGACATCACTCTCAACACGATTCTTCCACTTCCACTGCTCTCGATGCTGCTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACCGGCCATGCTCGTTTCAGAAGGGCTCCGGTTGATTCTACTGCTTCCTCTCCGCCCAAGGTCAAGCCGCAACATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAACTAAAGAAACAAGAATCAGTTTCTGCTTTCAAGGTTTATTGCCCCACGCCTTACTCTGTTGTGCGTTTGCCTGGTCTGCCCAACAACAACTTCCATCAGCCTTCTAATCCGCCAAATACTTTCCAACCCCAGCAGAATAACTCATCGGGGGGACTAAAAAATGGGTCTGTAAACAGAAAAGACTCAACTTCCGCAATCAATTTCGCAGCCTCGCCGTCGATTTCCGCTGCAAATTCTTATATTTCATCCTTAACCGGAGACACCGAAAGCTTAAACCCATCTCTGTCATCTGGTTTCCAGTTCACCAACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCCTCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCAGGAAGTGTGGTTCGTCTTCAGGTCGATGTCACTGTTCCAAGAAGAGGAAAAACAGAATGAAAAGAGTGATCAGAGTTCCAGCGGTTAGTTCAAAACTTGCGGACATCCCACCGGACGATTACTCATGGAGAAAGTACGGCCAAAAACCAATTAAAGGGTCTCCTCACCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAGCACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTTACTTACGAGAACGATCACAATCACGCCCTATCCGCCCAAACACCTGCACCGCTTCTTCTAGAGTCATCATAA | 1143 | 48.21 | MLLLKNNMAVEFMVGFGDAAANFTPSMEENAAVSAVQEAASAGIQSVHTFLTLVSHTPNRHHSQHDSSTSTALDAAAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVDSTASSPPKVKPQHQDPSSSSPISVPQLKKQESVSAFKVYCPTPYSVVRLPGLPNNNFHQPSNPPNTFQPQQNNSSGGLKNGSVNRKDSTSAINFAASPSISAANSYISSLTGDTESLNPSLSSGFQFTNMSQVSSAGKPPLSSSSLKRKCNSMDDSARKCGSSSGRCHCSKKRKNRMKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSAQTPAPLLLESS | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12075582 | 12078149 | + | CmaCh01G018200.1 | Cma01g01820 | 287513 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01820 | 380 | MobiDBLite | consensus disorder prediction | 105 | 139 | - | - | |
Cma01g01820 | 380 | Gene3D | WRKY domain | 292 | 368 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g01820 | 380 | Pfam | Plant zinc cluster domain | 260 | 305 | IPR018872 | - | |
Cma01g01820 | 380 | PANTHER | WRKY TRANSCRIPTION FACTOR NTEIG-D48 | 28 | 380 | - | - | |
Cma01g01820 | 380 | MobiDBLite | consensus disorder prediction | 245 | 263 | - | - | |
Cma01g01820 | 380 | Pfam | WRKY DNA -binding domain | 309 | 365 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g01820 | 380 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 28 | 380 | IPR044810 | GO:0003700 | |
Cma01g01820 | 380 | MobiDBLite | consensus disorder prediction | 164 | 198 | - | - | |
Cma01g01820 | 380 | MobiDBLite | consensus disorder prediction | 118 | 139 | - | - | |
Cma01g01820 | 380 | SUPERFAMILY | WRKY DNA-binding domain | 305 | 366 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g01820 | 380 | MobiDBLite | consensus disorder prediction | 165 | 198 | - | - | |
Cma01g01820 | 380 | SMART | WRKY_cls | 307 | 367 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g01820 | 380 | ProSiteProfiles | WRKY domain profile. | 302 | 368 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma01g01820 | 380 | MobiDBLite | consensus disorder prediction | 245 | 281 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01820 | Cma09g00254 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01575 | Cma-Chr1:10882048 | Cma01g01820 | Cma-Chr1:12075582 | 4.90E-79 | dispersed | |
Cma01g01820 | Cma-Chr1:12075582 | Cma20g00968 | Cma-Chr20:4913335 | 9.87E-88 | dispersed | |
Cma02g01770 | Cma-Chr2:9870246 | Cma01g01820 | Cma-Chr1:12075582 | 2.27E-54 | dispersed | |
Cma01g01820 | Cma-Chr1:12075582 | Cma03g00963 | Cma-Chr3:6836165 | 2.29E-106 | wgd | |
Cma01g01820 | Cma-Chr1:12075582 | Cma07g00689 | Cma-Chr7:3032530 | 1.11E-08 | wgd | |
Cma01g01820 | Cma-Chr1:12075582 | Cma09g00254 | Cma-Chr9:1067795 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34371 | PF03106 | WRKY | 3.80E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01820 | - | - | cmo:103493562 | 591.652 |