Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01820 ATGCTGCTTCTCAAGAACAATATGGCTGTGGAGTTTATGGTGGGTTTTGGGGATGCTGCTGCTAATTTCACGCCCAGTATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTTCATACTTTCCTCACCTTGGTGTCTCATACTCCTAATCGACATCACTCTCAACACGATTCTTCCACTTCCACTGCTCTCGATGCTGCTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAAAAGGTCATTTCTTTACTCGACCGGAACCGAACCGGCCATGCTCGTTTCAGAAGGGCTCCGGTTGATTCTACTGCTTCCTCTCCGCCCAAGGTCAAGCCGCAACATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAACTAAAGAAACAAGAATCAGTTTCTGCTTTCAAGGTTTATTGCCCCACGCCTTACTCTGTTGTGCGTTTGCCTGGTCTGCCCAACAACAACTTCCATCAGCCTTCTAATCCGCCAAATACTTTCCAACCCCAGCAGAATAACTCATCGGGGGGACTAAAAAATGGGTCTGTAAACAGAAAAGACTCAACTTCCGCAATCAATTTCGCAGCCTCGCCGTCGATTTCCGCTGCAAATTCTTATATTTCATCCTTAACCGGAGACACCGAAAGCTTAAACCCATCTCTGTCATCTGGTTTCCAGTTCACCAACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCCTCCTCCTCACTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCAGGAAGTGTGGTTCGTCTTCAGGTCGATGTCACTGTTCCAAGAAGAGGAAAAACAGAATGAAAAGAGTGATCAGAGTTCCAGCGGTTAGTTCAAAACTTGCGGACATCCCACCGGACGATTACTCATGGAGAAAGTACGGCCAAAAACCAATTAAAGGGTCTCCTCACCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAGCACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTTACTTACGAGAACGATCACAATCACGCCCTATCCGCCCAAACACCTGCACCGCTTCTTCTAGAGTCATCATAA 1143 48.21 MLLLKNNMAVEFMVGFGDAAANFTPSMEENAAVSAVQEAASAGIQSVHTFLTLVSHTPNRHHSQHDSSTSTALDAAAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVDSTASSPPKVKPQHQDPSSSSPISVPQLKKQESVSAFKVYCPTPYSVVRLPGLPNNNFHQPSNPPNTFQPQQNNSSGGLKNGSVNRKDSTSAINFAASPSISAANSYISSLTGDTESLNPSLSSGFQFTNMSQVSSAGKPPLSSSSLKRKCNSMDDSARKCGSSSGRCHCSKKRKNRMKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSAQTPAPLLLESS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12075582 12078149 + CmaCh01G018200.1 Cma01g01820 287513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01820 380 MobiDBLite consensus disorder prediction 105 139 - -
Cma01g01820 380 Gene3D WRKY domain 292 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g01820 380 Pfam Plant zinc cluster domain 260 305 IPR018872 -
Cma01g01820 380 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 28 380 - -
Cma01g01820 380 MobiDBLite consensus disorder prediction 245 263 - -
Cma01g01820 380 Pfam WRKY DNA -binding domain 309 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g01820 380 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 28 380 IPR044810 GO:0003700
Cma01g01820 380 MobiDBLite consensus disorder prediction 164 198 - -
Cma01g01820 380 MobiDBLite consensus disorder prediction 118 139 - -
Cma01g01820 380 SUPERFAMILY WRKY DNA-binding domain 305 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g01820 380 MobiDBLite consensus disorder prediction 165 198 - -
Cma01g01820 380 SMART WRKY_cls 307 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g01820 380 ProSiteProfiles WRKY domain profile. 302 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g01820 380 MobiDBLite consensus disorder prediction 245 281 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01820 Cma09g00254 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01575 Cma-Chr1:10882048 Cma01g01820 Cma-Chr1:12075582 4.90E-79 dispersed
Cma01g01820 Cma-Chr1:12075582 Cma20g00968 Cma-Chr20:4913335 9.87E-88 dispersed
Cma02g01770 Cma-Chr2:9870246 Cma01g01820 Cma-Chr1:12075582 2.27E-54 dispersed
Cma01g01820 Cma-Chr1:12075582 Cma03g00963 Cma-Chr3:6836165 2.29E-106 wgd
Cma01g01820 Cma-Chr1:12075582 Cma07g00689 Cma-Chr7:3032530 1.11E-08 wgd
Cma01g01820 Cma-Chr1:12075582 Cma09g00254 Cma-Chr9:1067795 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34371 PF03106 WRKY 3.80E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01820 - - cmo:103493562 591.652