Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01822 ATGAGTAAAATACCTCCCAGTGTTTTGCTGTTTCTGTTCGGCAACCTGCTCTCTTCTTTCGTTGTCCACGCCATAGTCAATGTTACTGGCAACAAAACGCAATACTTCAAAGTGGGTAGTGACAGAAATTCGGGAAAAGAATGTGATCGGGGGTGGCCTCACTGTAAGCAACCAATAACTGCTCAGCGATCATCTCTTTTGCCTGTTGAAGCAGAGGTTTTGATATTTGAAGACCTGAGGCTTTCAGTGGTGTACCCTGTGATTCAAAAATTCAAGTCAATTATCTCCTCGGATCCTCAAGGAATCACTAAAACATGGGTTGGATCGGATATATGCAACTACAAAGGTTTTTACTGTGACAACCCACCAGACAACAAGTCGGCCACGGCTGTTGCATCCATAGACTTCAATGGCTTCCAACTCAGTGCACCATCCCTCGAAGGCTTCCTCGATCAGCTCCCTGACATTGCTGTGTTTCATGCCAATTCCAACAAATTTGCAGGCACCATCTCCACGAACATTGCCAAGCTCCCTTATCTATACGAGCTGGACGTGAGCAACAACAGATTATCTGGTCCATTTCCTACTGCTGTTGTTGGTTTGAACAGCCTAACCTTCTTGGACCTTCGGTTCAATTTCTTCACTGGGTCAGTCCCACCTCGACTCTTCGTGCAGGACCTTGATTTTCTCCTGATCAACAACAACAATCTCATGCAAAATCTCCCAGACAGTCTTTCCAGCACCCATATTCTCTATCTCACCTTAGCCAACAACAAGTTAAGCGGTTCAATTCCAGTCGGTATTGTGGAAGCTTTGTCAACTCTAACTGAGGTTCTGCTGGTAAACAACTCCTTATCAGGGTGTTTGCCTTATGAATTGGGATCACTTGACGAAGCAGTTGTATTTGATGCCGGCAACAACCGTTTAACAGGACCATTACCCTTCTCCTTGGCTTGCCTAAAGAAAGTGGAGCAATTGAATTTCGCTGGAAATCTACTGTATGGTATGGTGCCGGAAATGGTTTGCGCGCTTCGAAATCTCATAAATCTATCTTTGTCGGACAACTATTTCACTGTTGTAGGGCCTCTGTGTCGGATTTTGATAGGGAGAGGAGTATTAAATATTAGAAACAATTGCATTCCAGATCTGCCTTTCCAGAGACCAATAGTTGAATGTGCAAAATTCTTAGCATTTCCCAGGTCGGACTTGATGGAGGCTGAATTTTCGGCGAATGGAGCCGTCGCCGGCGATTCTGTCCGCGAATTACTCACATTAGCTCGTCAATTCATCAATCAACGAAAGCCTTCTCAAGCCCTCCAAGCGGTTGTAATGGCAATGAGAACCCAAGGTGGGGATGCAGCAGTCTTTCAATCGTTGCACCGTGCTGGTGAGCTGTACAGAACTCGATTGCGGGAGACTGCAGATGTTGATCAACTAGCTTCTATATTTGCAGAGTGTGCTATAGCTGAAGCTCAGCCTCTGAACCCTGAACCTGGAGAATGTAACATGTCTAGCTCATCGGTTGTCGATGCTCACGGTAATTCTATACTGGCAGAAACTGGTAGGATGCAAGTTGTTATGGATGCATTCTCAGATGGGAGCAGTTTTATTTGTTTGCAATGTGGCGGTCTTGTTAGTAACCATCGCAAAGATGAGCACTATGCATATTGGTGTGCTCAGATCTAA 1686 45.26 MSKIPPSVLLFLFGNLLSSFVVHAIVNVTGNKTQYFKVGSDRNSGKECDRGWPHCKQPITAQRSSLLPVEAEVLIFEDLRLSVVYPVIQKFKSIISSDPQGITKTWVGSDICNYKGFYCDNPPDNKSATAVASIDFNGFQLSAPSLEGFLDQLPDIAVFHANSNKFAGTISTNIAKLPYLYELDVSNNRLSGPFPTAVVGLNSLTFLDLRFNFFTGSVPPRLFVQDLDFLLINNNNLMQNLPDSLSSTHILYLTLANNKLSGSIPVGIVEALSTLTEVLLVNNSLSGCLPYELGSLDEAVVFDAGNNRLTGPLPFSLACLKKVEQLNFAGNLLYGMVPEMVCALRNLINLSLSDNYFTVVGPLCRILIGRGVLNIRNNCIPDLPFQRPIVECAKFLAFPRSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAVVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12079065 12082613 + CmaCh01G018220.1 Cma01g01822 287515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01822 561 SUPERFAMILY L domain-like 88 380 - -
Cma01g01822 561 Gene3D Ribonuclease Inhibitor 248 367 IPR032675 -
Cma01g01822 561 PANTHER BNAA09G53810D PROTEIN 18 402 - -
Cma01g01822 561 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 18 402 - -
Cma01g01822 561 Gene3D Ribonuclease Inhibitor 87 247 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01822 - - - csv:101205813 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01822 Cma-Chr1:12079065 Cma16g00349 Cma-Chr16:1648343 1.48E-140 dispersed
Cma01g01822 Cma-Chr1:12079065 Cma11g01736 Cma-Chr11:11524791 2.02E-96 wgd
Cma01g01822 Cma-Chr1:12079065 Cma12g00565 Cma-Chr12:2946221 2.09E-96 wgd
Cma01g01822 Cma-Chr1:12079065 Cma16g00348 Cma-Chr16:1643388 1.02E-102 wgd
Cma01g01822 Cma-Chr1:12079065 Cma19g00588 Cma-Chr19:6526942 6.39E-106 wgd
Cma01g01822 Cma-Chr1:12079065 Cma04g00478 Cma-Chr4:2437964 3.86E-100 wgd
Cma01g01822 Cma-Chr1:12079065 Cma05g00165 Cma-Chr5:706144 6.36E-99 wgd
Cma01g01822 Cma-Chr1:12079065 Cma09g00252 Cma-Chr9:1059152 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g730 . . . . . . . . . . Cma01g01822 . Car01g01424 . . Cpe06g00173 . . . . . . . . . . . . . . . . . . . Lsi04g01530 Csa04g02433 . . . Blo18g00703 Bda08g01366 Bda01g01604 Bpe02g01793 Bpe05g00033 Bma01g00661 . Sed01g2684 Cmo01g01878 Cmo09g00245 . . . . . Cpe02g00192 Bhi09g03294 Tan01g4745 Cmetu07g0758 . Hepe01g1790 Mch11g0323 . Cla05g02067 . Cec05g2238 Cco05g2279 . Cmu05g2078 Cre05g2203 . . Chy07g00150 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007186 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01822 Cma_Chr01 FPKM 2.802354 3.349815 6.232182 6.144678 5.748307 6.377505 4.621933 3.576936 3.845271 3.902468