Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01823 ATGGAAGCTGGGGAGGATTGTTGCGTGAAGGTCGCCGTCAACATCCGCCCGCTAATCGGCGATGAGCGCCTTCTGGGGTGTAAGGATTGTGTCACCGTCATCTCCGGGAAGCCTCAGGTACAAATTGGATCCCATTCATTTACATTTGATCATGTCTACGGAAGTACGGGTTCACCCCCATCCTCGTTGTTTGAAGAATGTGTATCTCCGCTTGTAGATGGTCTATTCCAAGGCTATAATGCTACTGTTCTAGCCTATGGCCAGACAGGATCAGGGAAAACGTATACCATGGGTACAGGTATTAAGGATGGTTGTCAAACAGGAATCGTCCCTCAAGTCATGAATGTCTTGTTCAACAAGATTGAAACTTTAAAGAATCAAATGGAATTTCAGTTACATGTTTCCTTTATTGAGATTCTCAAGGAAGAAGTACGAGACCTGCTTGATTCAACTTCTTTTACCAAAGTGGAGGGTGCAAATGCAGGGAAAGTAACTCTGCCTGGGAAACCACCCATACAAATTCGTGAATCATCAAATGGTGTCATCACTCTAGCTGGATCTACAGAAGTTAGTGTTAGCACACCCAAAGAAATGGCTTCTTGTCTGGAGCAAGGATCATTGAGTAGGGCGACGGGAAGTACCAATATGAATAATCAGTCGAGTCGCTCGCATGCCATCTTCACCATCACATTAGAGCAAATGCGTAAACTAAATCCAGCATTTCCCGGTGAAAGCAATAATGACAATATGAGTGAAGAGTATTTGTGTGCAAAGTTGCACTTGGTAGATCTAGCTGGGTCTGAACGAGCCAAGAGAACAGGTTCTGATGGTTTACGTTTCAGGGAAGGAGTTTATATAAACAAGGGTCTTCTTGCACTTGGAAATGTTATCAGTGCTCTTGGCGATGAGAAGAAGCGCAGAGAAGGAGTCCATGTTCCATATAGAGACAGTAAATTGACTCGACTCTTACAGGACTCTCTTGGTGGTAATAGCAAAACTGCTATGATAGCCTGCATCAGCCCCGCTGATATTAATGCTGAGGAAACCCTCAACACTTTGAAATATGCAAATCGAGCTCGCAATATCCAAAATAAGCCAGTTGTCAACAGGGATCCCATGTCCAATGAAATGCTAAAAATGCGACAACAACTAGAATACCTGCAGGCAGAACTTTTTGCTCGTGGAGGGTCGTCATCTGATGAAACTCAGGTTCTTAAGGAAAGGATTGCCTGGCTTGAAGCTGCCAATCAAGATCTCTGTCGTCAGCTTCACGAATACCGTAGTCGATGTAGCATTGTGGAGCCATGTGAAACGGATGCTCGAGTTTGTGTCCAAGGTGGCATGAATTGCTCTGTCAAAAGTGATAGAATTATAAATTGCTCGGTCAAAAGTGATGGGCTCAAAAGGGACTTGCAAAGTTTAGAATCACCAGATTTTCAAATGAGTGAAACAATGTCAGGGGACTCGAGTGAAATTGATGAAGAGGTGGCAAAAGAATGGGAGCATACACTTCTACAAAGTAGCATGGACAAAGAATTACATGAACTAAATAAACGTTTAGAGCAAAAAGAGTCGGAAATGAAGCTTTTTGGAGGATTTGATACAGCAGCTCTGAAGCAGCATTTTGGGAAGAAAATCGTGGAACTGGAAGAAGAGAAAAGAGCTGTGCAGCAAGAGAGGGATAGCTTGTTAGCTGAAGTTGAAAACCTGTCTGCTTGTTCCGATGGTCAGACACAGAAATTATATGACATACATTCCCCAAAACTCAGAACACTTGAGGCTCAGATTCTGGAACTCAAGAAGAAACAGGAAAACCAGGTTCAGCTACTAAGGCAAAAGCAAAAAAGTGATGAAGCAGCCAAAAAATTGCAGGACGAGATTCAATTCATAAAGGCTCAGAAGGTTCAATTACAACAAAGGATGAAACAAGAGGCGGAACAATTTCGACAATGGAAAGCGTCTCGTGAGAAAGAGCTCCTCCAGCTAAAAAAGGAGGGCAGGAGAAATGAATATGAAAGGCACAAATTGCAAGCTCTAAATCAACGGCAGAAAATGGTTCTTCAAAGAAAAACAGAGGAGGCTGCAATGGCCACCAAGAGGCTGAAAGAACTACTGGAAGCTCGTAAATCCAACGGTCGAGAAAATTCAGGTATTACAAATGGAAATGGAATGAATGGGCAGATCCATGAGAAACCTCTACAACGCTGGCTTGACCATGAATTGGAAGTAATGGTGAACGTGCATGAAGTTCGTTTTGAATATGAAAAACAAAGCCAAGTGCGAGCTGCACTTGCGGAAGAGTTATCCATGCTGAGGCAAGTGGAAGAGTTTGCTTCAAAGGGCCTCAGCCCTCCAAGAGGGAAGAACGGTTTGGCTAGAGTGTCCTCTATGTCGCCAACCGCAAGAATGGCCAGAGTAACGTCGCTTGAGAACATGATAGGCATATCCTCAAATTCCCTTGTGGCCATGGCTTCACAACTTTCAGAGGCAGAGGAACGAGAGCGTGCCTTCACCAACCGCGGACGATGGAACCAATTGCGCTCCATGGGAGATGCTAAGAATTTACTTCAATACATGTTCAATTCTCTGGCAGATGCACGGTGCCAATTATGGGAAAAGGAACTTGAAAGTAGGGAAATGAAGGAGCAACTGAAAGAACTTGTGGGACTGCTGCGGCAGAGTGAGACACGGAGAAAGGAAGTAGAAAAGGAGCTGAAAGTGAGAGAGAAGGCTGCTGCAATTGCATTGGCTTCATCTGCACCGGTCCATCGTGAGCATGAGAGCAGACCACTTTCATTAAAACACTTTGCTGATGAATTGAGTGGTCCCTTGTCCCCAATGTCAGTACCAGCCCCGAAGCAACTCAAGTATACAGCAGGAATTGCCAATGGCTGCGTTAGAGATTCTACAGCATTCCCAGATCAGACACGAAAGATGGTACCAATTGGAAACTTATCAATGAAGAAGTTAGCAACTGTAGGACAAGCTGGGAAGCTTTGGAGATGGAAGAGAAGCCATCATCAATGGCTGTTAAAGTTTAAATGGAAATGGCAGAAACCATGGAGACTTGCAGAATTGATCAGGCATAGTGATGAAACAATAATGAGATCAAGGTCTCGACCACATGCTCTTCTTGCTGGGAGGTGA 3147 44.23 MEAGEDCCVKVAVNIRPLIGDERLLGCKDCVTVISGKPQVQIGSHSFTFDHVYGSTGSPPSSLFEECVSPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGIKDGCQTGIVPQVMNVLFNKIETLKNQMEFQLHVSFIEILKEEVRDLLDSTSFTKVEGANAGKVTLPGKPPIQIRESSNGVITLAGSTEVSVSTPKEMASCLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNPAFPGESNNDNMSEEYLCAKLHLVDLAGSERAKRTGSDGLRFREGVYINKGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTAMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEYLQAELFARGGSSSDETQVLKERIAWLEAANQDLCRQLHEYRSRCSIVEPCETDARVCVQGGMNCSVKSDRIINCSVKSDGLKRDLQSLESPDFQMSETMSGDSSEIDEEVAKEWEHTLLQSSMDKELHELNKRLEQKESEMKLFGGFDTAALKQHFGKKIVELEEEKRAVQQERDSLLAEVENLSACSDGQTQKLYDIHSPKLRTLEAQILELKKKQENQVQLLRQKQKSDEAAKKLQDEIQFIKAQKVQLQQRMKQEAEQFRQWKASREKELLQLKKEGRRNEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSNGRENSGITNGNGMNGQIHEKPLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELSMLRQVEEFASKGLSPPRGKNGLARVSSMSPTARMARVTSLENMIGISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGDAKNLLQYMFNSLADARCQLWEKELESREMKEQLKELVGLLRQSETRRKEVEKELKVREKAAAIALASSAPVHREHESRPLSLKHFADELSGPLSPMSVPAPKQLKYTAGIANGCVRDSTAFPDQTRKMVPIGNLSMKKLATVGQAGKLWRWKRSHHQWLLKFKWKWQKPWRLAELIRHSDETIMRSRSRPHALLAGR 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12084107 12092463 - CmaCh01G018230.1 Cma01g01823 287516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01823 1048 Coils Coil 589 654 - -
Cma01g01823 1048 Coils Coil 539 566 - -
Cma01g01823 1048 Coils Coil 863 911 - -
Cma01g01823 1048 Pfam Kinesin motor domain 37 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01823 1048 ProSitePatterns Kinesin motor domain signature. 257 268 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma01g01823 1048 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01823 1048 PRINTS Kinesin heavy chain signature 214 231 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01823 1048 PRINTS Kinesin heavy chain signature 258 276 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01823 1048 PRINTS Kinesin heavy chain signature 312 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01823 1048 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 2 1044 - -
Cma01g01823 1048 CDD KISc_KIF4 7 363 - -
Cma01g01823 1048 Gene3D Kinesin motor domain 2 390 IPR036961 -
Cma01g01823 1048 ProSiteProfiles Kinesin motor domain profile. 8 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma01g01823 1048 Coils Coil 506 526 - -
Cma01g01823 1048 Coils Coil 687 707 - -
Cma01g01823 1048 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 2 1044 - -
Cma01g01823 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 393 IPR027417 -
Cma01g01823 1048 SMART kinesin_4 6 370 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01823 - - - csv:101217119 1879.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01823 Cma09g00251 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01646 Cma-Chr1:11267130 Cma01g01823 Cma-Chr1:12084107 0 dispersed
Cma01g01823 Cma-Chr1:12084107 Cma13g00150 Cma-Chr13:1111669 5.01E-71 dispersed
Cma12g00200 Cma-Chr12:943844 Cma01g01823 Cma-Chr1:12084107 2.30E-37 dispersed
Cma15g01088 Cma-Chr15:6927633 Cma01g01823 Cma-Chr1:12084107 3.17E-31 dispersed
Cma01g01823 Cma-Chr1:12084107 Cma09g00251 Cma-Chr9:1049784 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005992 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 0 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01823 Cma_Chr01 FPKM 8.960155 9.320927 4.194209 4.905094 12.198839 12.426688 12.63734 3.486505 4.014519 3.627218