Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01826 ATGTCGGCCAAAGTTGGATTTGTGTTGAAGGAAGATCAACGTGGCGGGCGTGGGTGTTGGACAGAGAAGCAGCGAAGTAGGAAACAATTCCGCCCTTCTTTTTATCTTCTATGGAATTATAAATACCCACAATCGGTACAAGGGGTGTTGCGGTGTGTGAAGATGGAAGGACAAGTTTGCTCGGGTGTAAGTTCATCGACAGAGAAGAGGAAGCAAAGGCATCAACAAGAGAAGCAATATAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAAATCAGAGAACCCAACAAGCGTTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTCGCCGCCGCCAGGGCTTACGACACCGCCGTCTTCTACCTCCGAGGCCCCTCCGCCCGGCTGAATTTCCCGGAATCCATTTTCGAAGAGGACCAGCTGCAGGATGTGTCAGCCGCCTCCATACGCAAAAGAGCCACCGAAATCGGCGCTAGGGTTGACGCCATCCAAACCTCTCTACTTGCCTCTAATTCAAACTCTCAAATTTCGGAGAAGCCTGATTTAAACCAGTACCCCAACCCCGAAAGCTCAGACGACGATTAA 597 50.92 MSAKVGFVLKEDQRGGRGCWTEKQRSRKQFRPSFYLLWNYKYPQSVQGVLRCVKMEGQVCSGVSSSTEKRKQRHQQEKQYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPESIFEEDQLQDVSAASIRKRATEIGARVDAIQTSLLASNSNSQISEKPDLNQYPNPESSDDD 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12101981 12102849 + CmaCh01G018260.1 Cma01g01826 287519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01826 198 MobiDBLite consensus disorder prediction 173 198 - -
Cma01g01826 198 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Cma01g01826 198 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Cma01g01826 198 MobiDBLite consensus disorder prediction 173 191 - -
Cma01g01826 198 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Cma01g01826 198 PRINTS Ethylene responsive element binding protein signature 118 138 IPR001471 GO:0003700|GO:0006355
Cma01g01826 198 CDD AP2 78 138 IPR001471 GO:0003700|GO:0006355
Cma01g01826 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 63 196 - -
Cma01g01826 198 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Cma01g01826 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 63 196 - -
Cma01g01826 198 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Cma01g01826 198 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01826 Cma-Chr1:12101981 Cma02g00525 Cma-Chr2:2895061 4.08E-47 dispersed
Cma11g00754 Cma-Chr11:3667350 Cma01g01826 Cma-Chr1:12101981 2.22E-23 dispersed
Cma15g00011 Cma-Chr15:70469 Cma01g01826 Cma-Chr1:12101981 1.86E-23 dispersed
Cma01g01826 Cma-Chr1:12101981 Cma12g00563 Cma-Chr12:2940087 6.56E-22 wgd
Cma01g01826 Cma-Chr1:12101981 Cma03g00965 Cma-Chr3:6844657 3.10E-44 wgd
Cma01g01826 Cma-Chr1:12101981 Cma05g00169 Cma-Chr5:717107 6.85E-63 wgd
Cma01g01826 Cma-Chr1:12101981 Cma07g00693 Cma-Chr7:3047127 3.84E-47 wgd
Cma01g01826 Cma-Chr1:12101981 Cma09g00246 Cma-Chr9:1037948 2.38E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34372 PF00847 AP2 3.30E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01826 K09286 - csv:101219005 236.113