Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01826 | ATGTCGGCCAAAGTTGGATTTGTGTTGAAGGAAGATCAACGTGGCGGGCGTGGGTGTTGGACAGAGAAGCAGCGAAGTAGGAAACAATTCCGCCCTTCTTTTTATCTTCTATGGAATTATAAATACCCACAATCGGTACAAGGGGTGTTGCGGTGTGTGAAGATGGAAGGACAAGTTTGCTCGGGTGTAAGTTCATCGACAGAGAAGAGGAAGCAAAGGCATCAACAAGAGAAGCAATATAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAAATCAGAGAACCCAACAAGCGTTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTCGCCGCCGCCAGGGCTTACGACACCGCCGTCTTCTACCTCCGAGGCCCCTCCGCCCGGCTGAATTTCCCGGAATCCATTTTCGAAGAGGACCAGCTGCAGGATGTGTCAGCCGCCTCCATACGCAAAAGAGCCACCGAAATCGGCGCTAGGGTTGACGCCATCCAAACCTCTCTACTTGCCTCTAATTCAAACTCTCAAATTTCGGAGAAGCCTGATTTAAACCAGTACCCCAACCCCGAAAGCTCAGACGACGATTAA | 597 | 50.92 | MSAKVGFVLKEDQRGGRGCWTEKQRSRKQFRPSFYLLWNYKYPQSVQGVLRCVKMEGQVCSGVSSSTEKRKQRHQQEKQYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPESIFEEDQLQDVSAASIRKRATEIGARVDAIQTSLLASNSNSQISEKPDLNQYPNPESSDDD | 198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12101981 | 12102849 | + | CmaCh01G018260.1 | Cma01g01826 | 287519 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01826 | 198 | MobiDBLite | consensus disorder prediction | 173 | 198 | - | - | |
Cma01g01826 | 198 | Pfam | AP2 domain | 79 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01826 | 198 | ProSiteProfiles | AP2/ERF domain profile. | 79 | 136 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01826 | 198 | MobiDBLite | consensus disorder prediction | 173 | 191 | - | - | |
Cma01g01826 | 198 | PRINTS | Ethylene responsive element binding protein signature | 80 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01826 | 198 | PRINTS | Ethylene responsive element binding protein signature | 118 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01826 | 198 | CDD | AP2 | 78 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01826 | 198 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 63 | 196 | - | - | |
Cma01g01826 | 198 | SMART | rav1_2 | 79 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01826 | 198 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 63 | 196 | - | - | |
Cma01g01826 | 198 | Gene3D | AP2/ERF domain | 78 | 138 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g01826 | 198 | SUPERFAMILY | DNA-binding domain | 79 | 138 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01826 | Cma-Chr1:12101981 | Cma02g00525 | Cma-Chr2:2895061 | 4.08E-47 | dispersed | |
Cma11g00754 | Cma-Chr11:3667350 | Cma01g01826 | Cma-Chr1:12101981 | 2.22E-23 | dispersed | |
Cma15g00011 | Cma-Chr15:70469 | Cma01g01826 | Cma-Chr1:12101981 | 1.86E-23 | dispersed | |
Cma01g01826 | Cma-Chr1:12101981 | Cma12g00563 | Cma-Chr12:2940087 | 6.56E-22 | wgd | |
Cma01g01826 | Cma-Chr1:12101981 | Cma03g00965 | Cma-Chr3:6844657 | 3.10E-44 | wgd | |
Cma01g01826 | Cma-Chr1:12101981 | Cma05g00169 | Cma-Chr5:717107 | 6.85E-63 | wgd | |
Cma01g01826 | Cma-Chr1:12101981 | Cma07g00693 | Cma-Chr7:3047127 | 3.84E-47 | wgd | |
Cma01g01826 | Cma-Chr1:12101981 | Cma09g00246 | Cma-Chr9:1037948 | 2.38E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34372 | PF00847 | AP2 | 3.30E-11 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01826 | K09286 | - | csv:101219005 | 236.113 |