Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01839 ATGCTGCCGTTTCTGTCTACATCAAAGGTCGGCAAGTCCTTGATTTCGCGTAGACGTGATGTCAGACATGCGATCAAATACGCAAGTTGTAATGCCGAGCCGTGGAAATATCAAAACGTTCGACATGTGAAGTGTATTGCCGGTGTTGAGACCTCGTCGATTCATAGACTGTTTGATAAGGGTCAAAAGATTTTTCATGGGAGCTTCCATGATACTAGTGCTGGACAAACGAGGCGATTTATTGGCTGTGGAGATGGGCAAGAGGGCGGCGTTCTATCCAAAATATATGAGGAGAGACGCGTAATGGGGTATTCTCCGGAGCAGTTATTTGACGTAGTTGCAGCTGTTGACTTGTACCATGATTTTGTACCGTGGTGCCAGCGGTCAGAGGTAATCAAAACCTATCCTGATGGATCATTTGATGCTGAATTGGAGATTGGCTTCAAATTTCTTGTTGAGAGTTACACTTCACATGTAGAGATTCAAAGACCGAAGTCTGTAAAGACAACAGTATCTCAGAGCACGCTGTTTGATCACTTGATAAATATTTGGGAGTTCCAACCGGGACCAGTTCCAGGGACTTGCAACCTCTACTTTTTAGTAGATTTTAAGTTCCAGTCACCCCTGTATCGACAGGTGGCTTCGGTGTTCTTTAAGGAGGTTGTCTCAAAACTGGTTGGTTCATTCAGTGATCGCTGCCGATTGATTTATGGACCAGGGGTTGCAGTCCTTGAAAATTCATACGGCCAAAGAGCTTAA 759 44.66 MLPFLSTSKVGKSLISRRRDVRHAIKYASCNAEPWKYQNVRHVKCIAGVETSSIHRLFDKGQKIFHGSFHDTSAGQTRRFIGCGDGQEGGVLSKIYEERRVMGYSPEQLFDVVAAVDLYHDFVPWCQRSEVIKTYPDGSFDAELEIGFKFLVESYTSHVEIQRPKSVKTTVSQSTLFDHLINIWEFQPGPVPGTCNLYFLVDFKFQSPLYRQVASVFFKEVVSKLVGSFSDRCRLIYGPGVAVLENSYGQRA 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12152767 12157408 + CmaCh01G018390.1 Cma01g01839 287532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01839 252 CDD COQ10p_like 96 234 IPR044996 GO:0006744|GO:0045333|GO:0048039
Cma01g01839 252 SUPERFAMILY Bet v1-like 96 238 - -
Cma01g01839 252 PANTHER SPERM PROTEIN HOMOLOG 1 251 IPR044996 GO:0006744|GO:0045333|GO:0048039
Cma01g01839 252 Pfam Polyketide cyclase / dehydrase and lipid transport 102 229 IPR005031 -
Cma01g01839 252 PANTHER COENZYME Q-BINDING PROTEIN COQ10, MITOCHONDRIAL 1 251 - -
Cma01g01839 252 Gene3D - 94 238 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01839 K18588 COQ10; coenzyme Q-binding protein COQ10 - csv:101214157 431.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01839 Cma09g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01839 Cma-Chr1:12152767 Cma09g00228 Cma-Chr9:968379 1.46E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g764 Blo01g01530 Blo12g00957 Bda01g00566 . Bpe02g00427 . . Bma01g02276 . . Cma01g01839 Cma09g00228 Car01g01433 . . Cpe06g00159 . . . . . . . . . . . . . . . Cone4ag1575 . Cone17ag0844 Cone20ag0191 . Csa04g02407 . . . . . . . . . . . Cmo01g01898 Cmo09g00220 . . . Car09g00196 . . Bhi09g03327 . . . Hepe01g1761 Mch11g0287 . . . . . . . . . . Chy07g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008704 0 1 2 1 0 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 0 1 4 0 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01839 Cma_Chr01 FPKM 5.064378 6.288557 5.433156 4.741223 5.14346 5.269242 5.50351 2.968512 2.684856 3.011671