Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01844 ATGGAGAACCCAAAACCCTACCCGCGTTCGAATCCTATGCTATTCGCTTCCTCTTTCGTCCACCATCACTGTACCAGACTCGGTGCCGAGCTTTCTAATCGACTCGAAGAGGCCAAACGCTTTGCTGGAACCTTCGCCAGAAGATGGCCGGCGGAGGCGAATTGGCGATCCTTTCCTACCCCACCTTTTGCGTCCCTTGCGCAGCACACTAATGCATTGGCTGCCACTCTTAGCTCCGATCAAGTGGCTAAGTCCCTCGTCGGAACGGCGGTCTACACTGTTAGCAATTCAAACAACGAGTTTGTGCTCATTTCTGATCCTAATGGTGTCAAGTCAATTGGGTTGCTTTGCTTCCGCATGGAAGACGCCGAGACCTTTTTGGCTCAGGTCCGATCGAGGAAAAGAGAACTGAGAAGTAATGCAAAGGTTGTCCCACTTACCCTTGACCAGGTATATATGTTGAAAGTAGAAGGTATTGCATTCCGGTTTCTTCCAGATCCTGTTCAGATTAAGAATGCTTTAGAGCTCAAAGCCTCGGATTCCAAGAGCAGTTTTGATGGAGTTCCTGTTTTTCAGTCTGACCTTCTGATTGTGAAAAAGAAAAACAAGCGTTATTGTCCTATATACTTTACTAAGGAAGATATAGAAAAGGAACTCTCGAAGGTCTCAAAGGCATCAAGGGGATTAGGAACTTCTCAACATATTATGGTCGGTAGTTTGGAGGATGTTCTTAAGAAAATGGAGTTGAATGAGAAGAACTCAGCCTGGGAAGATCTAATTTTTATTCCACCTGGAAAAAGCCACTCTCAACACATTCAAGAAGTGGGCAAAGCATGA 837 45.76 MENPKPYPRSNPMLFASSFVHHHCTRLGAELSNRLEEAKRFAGTFARRWPAEANWRSFPTPPFASLAQHTNALAATLSSDQVAKSLVGTAVYTVSNSNNEFVLISDPNGVKSIGLLCFRMEDAETFLAQVRSRKRELRSNAKVVPLTLDQVYMLKVEGIAFRFLPDPVQIKNALELKASDSKSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKNSAWEDLIFIPPGKSHSQHIQEVGKA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12182030 12184997 - CmaCh01G018440.1 Cma01g01844 287537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01844 278 PANTHER PROTEIN TIC 22, CHLOROPLASTIC 8 275 IPR007378 GO:0015031
Cma01g01844 278 Gene3D - 165 248 - -
Cma01g01844 278 Gene3D - 90 164 - -
Cma01g01844 278 PANTHER PROTEIN TIC 22, CHLOROPLASTIC 8 275 - -
Cma01g01844 278 Coils Coil 120 140 - -
Cma01g01844 278 Pfam Tic22-like family 17 274 IPR007378 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01844 - - - cmo:103493535 504.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01844 Cma09g00222 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00102 Cma-Chr8:547140 Cma01g01844 Cma-Chr1:12182030 5.81E-45 transposed
Cma01g01844 Cma-Chr1:12182030 Cma09g00222 Cma-Chr9:952829 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g774 . . . . . . . . . . Cma01g01844 Cma09g00222 . . . Cpe06g00156 . . . . . . . . . . . . . . . . Cone7ag1383 . . Lsi04g01568 Csa04g02402 . . Blo17g00854 . Bda08g01352 . . Bpe05g00051 . Bma05g00075 Sed01g2658 Cmo01g01903 Cmo09g00216 . . . Car09g00192 . Cpe02g00176 Bhi09g03334 Tan01g4803 Cmetu07g0980 . Hepe01g1755 Mch11g0281 . Cla05g02034 Cam05g2184 Cec05g2200 Cco05g2246 Clacu05g2176 Cmu05g2043 Cre05g2171 . . Chy07g00126 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009287 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01844 Cma_Chr01 FPKM 10.512167 8.175045 14.019542 12.882766 27.56879 28.30822 30.834974 10.680293 11.654598 11.92584