Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01849 ATGTGCACAAGGGGTGAACATCATACAGTCCCGCTCTCCGTGCTCCTGAAGCGTGAATTGGCGATTGAGAAGATTGAAAGACCGGAAATCGTACATGGTCAAGCGTGTCAGAGTAAGAAAGGGGAGGATTTTACGTTGGTAAAGACGGAATGCGAGAGAGTGGTTGGAGATGGAGTCTCTACGTATTCGGTTTTTGGGATTTTTGATGGACATAATGGATCTGCTGCTGCTATTTATGCGAAGGAAAACCTGTTGAACAATGTTTTAGCTGCTATTCCATCAGATCTCAACAGAGATGAATGGATTGCAGCATTACCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACCGACAAAGATTTTCAAGAGAAAGCACAAACATCAGGAACCACTGTCACCTTCATGATCATTGAGGGATGGGTTATCACTGTTGCTTCTGTTGGAGATTCCCGTTGCACTTTAGAATCAGCTGAAGGTGGCATCTACTACTTATCAGCAGATCATAGACTAGAATGCAATGAAGAAGAGAGAGAACGTATAATTGCTAGTGGAGGTGAGGTAGGCCGACTGAATACTGGTGGTGGTGCAGAGATCGGTCCATTGAGATGCTGGCCCGGTGGCTTGTGTCTATCACGATCCATTGGTGATATGGATGTTGGTGAGTTTATAGTGCCTGTTCCCTATGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATCATATCAAGTGATGGTGTTTGGGATGCTTTATCCGCTGAAACTGCCTATGATTGTAGTCGAGGGATGCCAGCAGAAACTGCTGCTGCACAGATTGTGAAGGAAGCAGTACATTCAAAGGGACTTCGAGATGATACTACGTGCATTGTGATTGACATATATCCAAGGGAGAAATCATCAACTGTTTTGCAGCCACTAAAGAAGCAGGGAAAAGGAATGTTTAAGTCAATGTTCCGCAAAAGATCTTCTGAATCATCTTCTCATTTGGGGAAGGAAAATAATGAGTTGGATGTCGTTGAAGAATTATTTGAGGAAGGATCGGCAATGCTGTCAGAAAGGTTAGATGCCAAGTATCCTATCTGCAACATGTTTAAGCTGTTTGTATGTGCAGTATGCCAAGTTGAGATCCAACCTCGGGAGGGTATTTCCATATATGCTGACTCATCTAACAGAGGAAAATTGCGTGCTTGGGATGGTCCTTTTCTATGCTTAAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAAGAGACCATCTGGAGATAGACACAGCAGTGGAAGTGACTAG 1287 44.13 MCTRGEHHTVPLSVLLKRELAIEKIERPEIVHGQACQSKKGEDFTLVKTECERVVGDGVSTYSVFGIFDGHNGSAAAIYAKENLLNNVLAAIPSDLNRDEWIAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIIEGWVITVASVGDSRCTLESAEGGIYYLSADHRLECNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSTGGRVIISSDGVWDALSAETAYDCSRGMPAETAAAQIVKEAVHSKGLRDDTTCIVIDIYPREKSSTVLQPLKKQGKGMFKSMFRKRSSESSSHLGKENNELDVVEELFEEGSAMLSERLDAKYPICNMFKLFVCAVCQVEIQPREGISIYADSSNRGKLRAWDGPFLCLSCQEKKEAMEGKRPSGDRHSSGSD 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12199846 12203900 - CmaCh01G018490.1 Cma01g01849 287542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01849 428 Pfam Protein phosphatase 2C 57 277 IPR001932 -
Cma01g01849 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 423 - -
Cma01g01849 428 CDD PP2Cc 39 293 IPR001932 -
Cma01g01849 428 Gene3D - 31 302 IPR036457 -
Cma01g01849 428 SUPERFAMILY PP2C-like 38 293 IPR036457 -
Cma01g01849 428 SMART PP2C_SIG_2 54 293 IPR001932 -
Cma01g01849 428 SMART PP2C_4 23 291 IPR001932 -
Cma01g01849 428 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Cma01g01849 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 423 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01849 Cma09g00218 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01849 Cma-Chr1:12199846 Cma18g01003 Cma-Chr18:8424972 7.55E-180 dispersed
Cma01g01849 Cma-Chr1:12199846 Cma09g00218 Cma-Chr9:936800 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01849 - - bhj:120085570 771.926