Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01850 ATGCGCAGAGAGCATGGCCCATGGCATAAATGCAGAGACAAGGAATTCACTGGTTTGTTGAAAACTTTGCCTCTTGGGGAAACTTTGGGGGCAAAAACAATTCGCTTTGCCTTCGTTGGAAGTATGAAGGTTCTTGTAACTGGGGCGTCTGGATATCTGGGCGGAAGGCTGTGCCATGCATTGTTGAACCGAGGCTTCTCCGTTCGGGCATTGGTCCGTCCGACCAGTGACCTCTCATCTCTTCCTCATGATCCTTCCGCTCTTGAGCTCGTCTATGGCGATGTCACCAACTACCAGTCGCTCCTAGATGCTTTCTCCGGCTGCCATATCGTATTCCACGCAGCCGCACTAGTCGAGCCCTGGATTCCTGATCCATCCAAATTCATCTCAGTCAACGTTCGAGGGTTGAAGAACGTGTTGCAAGCGGTTACAGAGACGAAGACGATCGAGAAGATAATCTACACGTCGTCGTTTTTTGCGCTTGGCTCCACCGATGGATATGTTGCCGATGAAAACCAGGTCCATCACGAGAAGTTCTTTTGTACGGAGTACGAGAAATCAAAGGCTATTGCTGACAAGATTGCATTGCAAGCTGCATCTGAGGGCGTCCCGATAGTGCCGGTTTATCCCGGAGTTATCTATGGTTCTGGAAAGCTTACGGCTGGAAATGTCATCGCCCGCATGCTGATCGAACGGTTCAATTGGCGATTGCCGGGTTATATAGGCCAAGGAACCGATAGATACTCGTTTAGCCATGTCGACGATGTGGTAGAAGGGCATATTGCAGCAATGCAGAAAGGTCGAGTAGGTGAAAGGTATCTTCTAACAGGAGAAAATGCATCATTTGTGGATGTTTTTGACACAGCTGCAGCCATTACTGGTACAAGAAGACCAATGTTTAACATTCCATTGTGGTTGATCGAAGCATATGGTTGGGTTTCAGTTTATATCTCTCGGATCACTGGGAAACTTCCTCTCATCAGCCCCCCGGTTGTGAGTGTTCTGAGACATCAATGGGCATATTCGTGCGAGAAGGCGAAAGAAGAACTGGATTATAACCCCAGAAGCTTGAAAGAAGGATTAGAAGAAATGGTTCCATGGCTAAAGAGCTTGGGTTTGATAAAGTATTAA 1131 47.75 MRREHGPWHKCRDKEFTGLLKTLPLGETLGAKTIRFAFVGSMKVLVTGASGYLGGRLCHALLNRGFSVRALVRPTSDLSSLPHDPSALELVYGDVTNYQSLLDAFSGCHIVFHAAALVEPWIPDPSKFISVNVRGLKNVLQAVTETKTIEKIIYTSSFFALGSTDGYVADENQVHHEKFFCTEYEKSKAIADKIALQAASEGVPIVPVYPGVIYGSGKLTAGNVIARMLIERFNWRLPGYIGQGTDRYSFSHVDDVVEGHIAAMQKGRVGERYLLTGENASFVDVFDTAAAITGTRRPMFNIPLWLIEAYGWVSVYISRITGKLPLISPPVVSVLRHQWAYSCEKAKEELDYNPRSLKEGLEEMVPWLKSLGLIKY 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12206259 12209284 - CmaCh01G018500.1 Cma01g01850 287543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01850 376 CDD AR_FR_like_1_SDR_e 44 368 - -
Cma01g01850 376 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 43 376 - -
Cma01g01850 376 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 43 376 - -
Cma01g01850 376 Pfam NAD dependent epimerase/dehydratase family 44 273 IPR001509 -
Cma01g01850 376 Gene3D - 35 375 - -
Cma01g01850 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 372 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01850 K15891 FLDH; NAD+-dependent farnesol dehydrogenase [EC:1.1.1.354] - csv:101223178 602.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01850 Cma-Chr1:12206259 Cma05g01008 Cma-Chr5:8087186 6.33E-18 dispersed
Cma09g00028 Cma-Chr9:139399 Cma01g01850 Cma-Chr1:12206259 1.03E-06 dispersed
Cma01g01850 Cma-Chr1:12206259 Cma09g00217 Cma-Chr9:933547 1.91E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g782 . Blo12g00951 . Bda03g00219 . Bpe04g00185 Bma04g00172 . . . Cma01g01850 . Car01g01443 . . . . . . . . . . . . . . . . . . . . Cone17ag0837 . Lsi04g01575 Csa04g02395 . . . . . . . . . . Sed13g1732 Cmo01g01911 . . . . . . Cpe02g00171 Bhi09g03340 Tan01g4810 Cmetu07g1953 . Hepe01g1747 Mch11g0273 . Cla05g02028 Cam05g2179 Cec05g2194 Cco05g2241 Clacu05g2171 Cmu05g2039 Cre05g2166 . . Chy07g00120 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013934 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01850 Cma_Chr01 FPKM 10.204146 13.390996 4.803757 4.463778 8.314651 8.553432 8.621081 14.24867 13.681355 14.417953