Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01862 ATGAATCGCAAAGAAAGGACAACAAGGCTGCAGTCTATTAGAGCATCTGCAAATCATGAAAAAGGGAACGTGGATATGCAGGAGGCGAAGCAACAAGGTGCAGCGAAAGCAGCCACGAACGGGCGGGCTTCACGCAGACAGAGAAAAGTGGCTTTGCAACAAGACATTGAGAAGTTGAAGAAGAAGCTGAGACATGAAGAGAATGTGGGTCGAGCTCTCAAGAGAGCTTTCACCAGACCTCTGGGAGCCTTACCCCGCCTCCTTCCTTCCCTTCCTCCCAATATGCTAGAACTTCTTGCCGAAGTGGCTGTTCTTGAAGAGGAGGTGGTGCGGCTTGAAGAACAGGTTGTGCATTTCAGGCAGGATTTGTATCAGGAAGCTGTCAACATTTCGTCCTCCACGAAGAACATGGAGGCTTCCCCGAAGAACAATTCTAAGCAAGTTCAGAAAATTGATTGTCTGGGAAAGGAAAATGAATCTCGAGTGAATTTGATGAGCAGCAACAAGAAGCCCCCTCTCCACAAAACCCATGTGACAAAGACTCCAATCAACACACCTTCAGTTCATCACAAATCATCACAGAAACCAAATTCTCCAGAAAATACTGAAGCAAGACAACTACGTTCCCCGGATAACAAGGTGTATGGTGATGATAATCCAAACACTATTTCTGAAAATATTTTGAAATGCTTATCAACAATTCTATTGAGATTGAGTTCAACCAAGAACAGAGGTGCTGCTGAAAATTTGCATCTCTTCTCAATGGTAAGTACCATTCAAAACGAAGAGACGGGTTGTCTTCACGACCCTTATGATATATGTTCAAAATTTGGAATGCGGGATATCGGTCCATACAAGAACGTGTGCACGGTCGAAGCTAGTTCCATCAATACGAAACGGACAGCGAACTCTTCATTTCTATTTCAAAGATTGAAACTCCTCATGGGGAAACTTGCTTCTGTCAACTTGCAACATCTTATCCATCAGGAGAAACTTGCTTTTTGGATCAACATCTATAATTCCTGCATGATAAATGCATTCTTAGAACATGGAATACCAGAGAGTCCCAAGATGGTTGTTGCCTTAATGCAGAAGGCAACAATTAATGTGAGCGGGCAGTTGCTAAATGCTATAACCATAGAGCATTTCATCCTGAGACTGCCTTATCATTCACAATACGCTTTCTCAAAGAGCGCAAAATATGACGAGAAGACGTTTAGAAGTACTTTCGGGTTGGAGTTATCAGAACCATTGGTTACGTTTGCTCTATCATGTGGAAGCTGGTCTTCCCCTGCTGTGAGAGTGTACACGGCATCCCAGGTCGAAAACGAGCTAGAAGTAGCAAAAAGGGAGTATTTAGAAGCTGCAGTTGGGATTTCATCAGAGAAATTTGGAATACCAAAGCTGTTGGATTGGTATTTGCTGGACTTTGGTAAAGACTTGGAGTCGTTGGTGGACTGGGTCTGCCTTCAACTACCAAGTGAATTAGGAAAAGAAGCAATTAAGTTGGTGGAGAGAAGAAGAAAGCAGCCTCTGTCGGAGTTTGTCAAAGTGATACCTTATGAGTTCAGTTTTAGATATCTTTTGTGCACATAA 1596 43.11 MNRKERTTRLQSIRASANHEKGNVDMQEAKQQGAAKAATNGRASRRQRKVALQQDIEKLKKKLRHEENVGRALKRAFTRPLGALPRLLPSLPPNMLELLAEVAVLEEEVVRLEEQVVHFRQDLYQEAVNISSSTKNMEASPKNNSKQVQKIDCLGKENESRVNLMSSNKKPPLHKTHVTKTPINTPSVHHKSSQKPNSPENTEARQLRSPDNKVYGDDNPNTISENILKCLSTILLRLSSTKNRGAAENLHLFSMVSTIQNEETGCLHDPYDICSKFGMRDIGPYKNVCTVEASSINTKRTANSSFLFQRLKLLMGKLASVNLQHLIHQEKLAFWINIYNSCMINAFLEHGIPESPKMVVALMQKATINVSGQLLNAITIEHFILRLPYHSQYAFSKSAKYDEKTFRSTFGLELSEPLVTFALSCGSWSSPAVRVYTASQVENELEVAKREYLEAAVGISSEKFGIPKLLDWYLLDFGKDLESLVDWVCLQLPSELGKEAIKLVERRRKQPLSEFVKVIPYEFSFRYLLCT 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12239567 12242629 + CmaCh01G018620.1 Cma01g01862 287555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01862 531 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 149 529 - -
Cma01g01862 531 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 2 150 - -
Cma01g01862 531 MobiDBLite consensus disorder prediction 1 48 - -
Cma01g01862 531 MobiDBLite consensus disorder prediction 161 205 - -
Cma01g01862 531 Pfam Protein of unknown function, DUF547 324 453 IPR006869 -
Cma01g01862 531 MobiDBLite consensus disorder prediction 161 220 - -
Cma01g01862 531 Pfam Leucine-zipper of ternary complex factor MIP1 45 126 IPR025757 -
Cma01g01862 531 Coils Coil 95 122 - -
Cma01g01862 531 PANTHER EXPRESSED PROTEIN 2 150 - -
Cma01g01862 531 PANTHER EXPRESSED PROTEIN 149 529 - -
Cma01g01862 531 Coils Coil 42 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01862 - - - csv:101211254 824.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01862 Cma09g00212 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01862 Cma-Chr1:12239567 Cma07g00716 Cma-Chr7:3158189 3.89E-18 dispersed
Cma01g01862 Cma-Chr1:12239567 Cma03g00989 Cma-Chr3:6979322 3.86E-16 wgd
Cma01g01862 Cma-Chr1:12239567 Cma09g00212 Cma-Chr9:897796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g817 . Blo12g00945 . Bda03g00225 Bpe02g00421 Bpe04g00192 . . . . Cma01g01862 Cma09g00212 Car01g01450 . . Cpe06g00146 . . . . . . . . . . . . . . . Cone4ag1558 . . . Lsi04g01584 Csa04g02384 . . . . . . . . . . Sed01g2644 Cmo01g01920 . . . . Car09g00179 . Cpe02g00164 Bhi09g03359 Tan01g4825 Cmetu07g0443 . . . . Cla05g02010 Cam05g2163 Cec05g2179 Cco05g2227 Clacu05g2155 Cmu05g2023 Cre05g2150 . . Chy07g00111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007331 0 4 1 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01862 Cma_Chr01 FPKM 3.599418 3.554422 9.429726 8.773026 17.880861 16.673838 16.509937 5.501021 5.080357 6.144538