Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01864 ATGGATTATCATTTCAATGGTGGAAGATCTAAGATCTCGACAGTTCCAACTACACCTGAAGTTATTGGAAATTACTTCTACAGCGCACCTTGTAGTCCAATGCGCATGTCCGAGTTCTATAGGGACTTCGATGAGATGCAACCTTCCCAAATGGATGAAGCATACATGGAGGAGGATGGCGATTTTGCATTTGATATTTGCCGGCAGTTCGAGGCAACCACACTCTCAGCTGATGAGCTATTTGATGACGGCAAAATCCGATCACTAGAGACGCCACCACAATCACCAATTTCTCAACAAAATAAAACATTTCAGAATACGTACTCTACTGAAAGGAGGAAAAATCCAACAACAGAAACAATAATTGAGAACGCAGAAAGGAAAAAGGAACAGAAGAGAGGGAGGGGAAGAAACCAAGCCTTAACGTCCTCAGCCTCCCGGAGAGCAGTGAGGTCGCTCTCCCCCATTAGAGTTTCTTCATCTCCATGGTACGAGAAACAGCCTTTACGAAAAAACGTTGGACAGCTGAAGTTGATTCCAGGATCCCCTTCTGCTGCTGGAACCAATTCCAATACCACCTCATCTAAGGGCAGTAGAAGGTGGAGACTAACGGACCTGTTTCGAAGTGCATCTGAAGGACGAGGAACTGGAAAAGATCCTCTAAGGAAATATTCAACCTTATACAAGAAACAGGAAGAGAATAAGAATACGAGCTTCAAATCCAATAATAGCAGAGATGGAGCCGTTTCAATTTATGATCCGCATTTTTCATTGAATAGAGCAGCATCAGAAGACAAGAAGAAAAAGAAGACTTTCCTGCCCTACAAGGGGATTTTGGGAGGACTCCTCTTCAATCCAGCGGTCCATATGCACACCAACTTCAGGCACTCCCACTAA 897 44.04 MDYHFNGGRSKISTVPTTPEVIGNYFYSAPCSPMRMSEFYRDFDEMQPSQMDEAYMEEDGDFAFDICRQFEATTLSADELFDDGKIRSLETPPQSPISQQNKTFQNTYSTERRKNPTTETIIENAERKKEQKRGRGRNQALTSSASRRAVRSLSPIRVSSSPWYEKQPLRKNVGQLKLIPGSPSAAGTNSNTTSSKGSRRWRLTDLFRSASEGRGTGKDPLRKYSTLYKKQEENKNTSFKSNNSRDGAVSIYDPHFSLNRAASEDKKKKKTFLPYKGILGGLLFNPAVHMHTNFRHSH 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12246228 12247124 + CmaCh01G018640.1 Cma01g01864 287557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01864 298 PANTHER AR781 1 294 - -
Cma01g01864 298 MobiDBLite consensus disorder prediction 182 200 - -
Cma01g01864 298 MobiDBLite consensus disorder prediction 88 153 - -
Cma01g01864 298 Pfam Protein of unknown function (DUF1645) 77 274 IPR012442 -
Cma01g01864 298 MobiDBLite consensus disorder prediction 91 115 - -
Cma01g01864 298 MobiDBLite consensus disorder prediction 116 136 - -
Cma01g01864 298 MobiDBLite consensus disorder prediction 175 223 - -
Cma01g01864 298 MobiDBLite consensus disorder prediction 137 153 - -
Cma01g01864 298 PANTHER - 1 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01864 - - - cmax:111480791 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01864 Cma-Chr1:12246228 Cma20g00891 Cma-Chr20:4283221 2.89E-22 dispersed
Cma12g01039 Cma-Chr12:8241889 Cma01g01864 Cma-Chr1:12246228 1.10E-09 dispersed
Cma01g01864 Cma-Chr1:12246228 Cma11g01762 Cma-Chr11:11764773 7.64E-21 wgd
Cma01g01864 Cma-Chr1:12246228 Cma19g00614 Cma-Chr19:6684059 6.55E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g818 . . . . . . . . . . Cma01g01864 . Car01g01451 . . . . . . . . . . . . . . . . . . . Cone7ag1394 . . . Csa04g02383 . . . . . . . Bpe05g00360 . . Sed01g2643 Cmo01g01921 . . . . . . Cpe02g00163 Bhi09g03360 Tan01g4826 Cmetu07g0696 . Hepe01g1738 Mch11g0264 . Cla05g02009 Cam05g2161 Cec05g2177 Cco05g2225 Clacu05g2153 Cmu05g2021 Cre05g2149 . . Chy07g00110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013350 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01864 Cma_Chr01 FPKM 3.547402 3.663645 0.822979 1.110207 0.827042 1.170574 1.401698 1.652813 1.018957 1.550881