Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01865 ATGGTGCTAGTGGTCGCTTCGTCGTCTGTTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCGGAACAACTATGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTTCGTGATCCCGCTGCCACCTCAGGCTCCGTACTCTACTGGTCTTGGTTTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAACCAATAATGGCATTGGCTTCCAACAATGAGGGTACATATATCGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTGAGCGGTAGACTGCTTATGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTAGAATTCTCTGAAGATGACTCCCTGCTAATTTCTGGCTCTGAAGATGGCTGCGTTAGAGTTTGGTCCCTTCTAAAGGTATTTGATGATGGATGGCAAAGGGAATCAAAACATTTGTATGAACATAGTTTCACTGGGCATAATCTACCTGTTACTGATATTGTTATTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCGATCATTGATGCAATTGCTTTGGATCCCGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAAAGCCCATCCAGCAGTGATTATGGATTGCATATTCTCGGCTCATTATCAAATCAGAGCAAGTCTGTTACTTCATTGGCATACTGCTCAAGTGGTAATTTATTGATCTCTGGATCTGAGGACGGAGCAATCAAAGTTTGGGATACCAGAACCAATAATATTATTCGTGTTCTCAAACATTCAAAAGGTCCTGTAAATAATTTACTTATTGTTCAACACCAGCTCCTCCCGACTTCACAGCTAAATCCAACCTCCCAAGGTTCTTTGAGAAAGCATCGATCACTATTACCTCCTGCCCTTGCAAAATTCGGAAACTCGAAGGACGACGATGAAGACACTGGTGTTATCATTGGTCGATCAGGTCCTCCCATGGAATCCATGGGGTTTTCCCCCATTAGTTCTCATGTGATGGATCATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCGTGAATATGGAAAATCCATGCAAATGCAACAGCAGTGGAGAAAACTCTGGCTTCAATGCGTCTCTCTGCTCTACTACGACGCGCGCGCTTTTCTGCTCCATCGTCCTCTCATTTTCAATTTCAACGCCTTAAATAGAGCGTTCATCAACCGAGTCTTCATTGGAAGGCAGTGTCGGAGCTACAAACCTATGGCTTCATCCATGTCTTCTTCGCCTAACACCAACAAAGACGTCTCTGAAGTAGCAGAGCAGCTCGGCATAATCACTGCGCCTTACGGTTCCTGGAAGTCGCCAATCACCGCCGATGTTGTTACTGGTGCCTCGAAGCGACTTGGTGGCACTGCTGTCGACGGCAATGGACGTCTTATTTGGCTCGAATCACGGCCCTATGAATCCGGGCGGGGAGTGCTCGTAAAGGAATCGGAAAAGCCAGGGGATGAGCCTTGTGATATTACTCCGAAGGAGTTTTCAGTGCGGAACACGACTCAGGAATACGGCGGTGGTGCATTTGCGGTCGCGGGAGACTTCGTTGTCTTTTCGAATTACAAGGATCAAAGACTTTATAAGCAATCCTTAAACTCAGATTCGCCTCCTCAAGCACTAACTCCCGATTACGGTGGACCATCAGTCAGTTATGCAGATGGGGTGTTTGATTCTCGGTTTAATCGTTTAATTACTATTCAGGAAGATGGACGTCAAAGTAGCTTGAATCCAATCAACACAATTGTATCAGTAGAACTTGACGGCAAGGATATTAATGAACCGAAGGTCTTAGTTGGAGGAAATGATTTCTATGCCTTCCCTAGAGTGGATCCCAAAGGGGAACGAATTGCGTGGATTGAATGGGGTCATCCTAACATGCCATGGGATAAATCTGAGCTCTGGGTTGGCTACCTCTCTGAGAATGGATCTGCTTGTAGTAATAGCTTCTTCACTGGTGATAGCGAGGTTTCCAAACGAGTTCGTGTTGCTGGTGGTGATCCAAAGCTTGTGGAATCTCCTACTGAACCGAAGTGGTCTGCTCAGGGAGAACTATTTTTTATTACTGATAGACAAAGTGGGTTTTGGAATCTCTATAAATGGTTTGAGGCTAATGATGAGGTGGCTCCATTATATTCTTTAAACGCTGAGTTTTCCCGACCCTTATGGGTTTTTGGCACAAATTCTTATGAGTTCCTAAAGAACAGTGTTGGGAGAAACATCATAGTCTGCACCTACAGACAGCATGGGCGATCATATCTTGGAGTCTTGGATGAGGCGCAAAGTTCACTATCCTTGCTCGACATCCCATTCACGGATATTAATAATATTGCTCTGGGTCGTGATTGTATATATGTGGAAGGATCGACAGCACTTGATCCATCATCTATTGCCAAGGTGACCCTAAATGAAAGAATCTTGGAAATAGTACATTTCACTATTATCTGGTCTTCTTCGCCGGATATTTTGAAATTTATGTCATACTTCAGCCTTCCTGAGTTCATTGAATTTCCAACCGAAGTTCCTGGTCAAACTGCTTTTGCCTACTTTTATCCGCCGACCAATCCTATTTACCAGGCTAGTCAGGATGAAAAGCCTCCACTGTTGTTGAGAAGTCATGGAGGGCCAACTGCTGAAACACGTGGAATTTTAAATCCTAGCATTCAATATTGGACTAGTCGAGGCTGGGGTTATGTTGATGTCAATTATGGTGGTAGCACTGGTTATGGGAGAGAGTACCGAGAAAGGCTTTTGAGGCAGTGGGGAATTGTTGATGTCAATGACTGCTGCAGTTGTGCAAGATTTTTGGTGGCGCCTCCTACAGTGAACTCTGGAAAGGTTGATGGAGAACGATTATGTATCACTGGGGGCTCTGCTGGTGGATATACCACCTTAGCTGCTCTTGCTTTTAGAGATACGTTTAAGGCAGGAGCTTCCTTGTACGGGATAGCTGACTTAAGCTTGTTGAGAGCAGATACACACAAGTTCGAATCTCATTATATCGACAATCTCGTTGGGAATGAAAAAGATTACTTTGAGAGGGCACCGATCAATTTTGTTGAGAAATTTTCTTGCCCTATAATCCTATTCCAGGGATTGGAGGACAAAGCCGTACTGCCTAATCAATCTCGTAAGATTTATCATGCCTTGAAGGATAAGGGCTTGCCTGTTGCACTAGTGGAGTATGAAGGAGAAGAACATGGTTTCCGCAAGGCAGAAAATATTAAATTTACCCTCGAACAGCAAATGATGTTCTTTGCTCGATTTGTTGGACGATTCCAAGTTGCAGACGATATTAATCCAATCAAAATTGAAAACTTTGACTGA 3528 44.19 MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGSVLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDTGVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQWRKLWLQCVSLLYYDARAFLLHRPLIFNFNALNRAFINRVFIGRQCRSYKPMASSMSSSPNTNKDVSEVAEQLGIITAPYGSWKSPITADVVTGASKRLGGTAVDGNGRLIWLESRPYESGRGVLVKESEKPGDEPCDITPKEFSVRNTTQEYGGGAFAVAGDFVVFSNYKDQRLYKQSLNSDSPPQALTPDYGGPSVSYADGVFDSRFNRLITIQEDGRQSSLNPINTIVSVELDGKDINEPKVLVGGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGSACSNSFFTGDSEVSKRVRVAGGDPKLVESPTEPKWSAQGELFFITDRQSGFWNLYKWFEANDEVAPLYSLNAEFSRPLWVFGTNSYEFLKNSVGRNIIVCTYRQHGRSYLGVLDEAQSSLSLLDIPFTDINNIALGRDCIYVEGSTALDPSSIAKVTLNERILEIVHFTIIWSSSPDILKFMSYFSLPEFIEFPTEVPGQTAFAYFYPPTNPIYQASQDEKPPLLLRSHGGPTAETRGILNPSIQYWTSRGWGYVDVNYGGSTGYGREYRERLLRQWGIVDVNDCCSCARFLVAPPTVNSGKVDGERLCITGGSAGGYTTLAALAFRDTFKAGASLYGIADLSLLRADTHKFESHYIDNLVGNEKDYFERAPINFVEKFSCPIILFQGLEDKAVLPNQSRKIYHALKDKGLPVALVEYEGEEHGFRKAENIKFTLEQQMMFFARFVGRFQVADDINPIKIENFD 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12248300 12259561 - CmaCh01G018650.1 Cma01g01865 287558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01865 1175 CDD WD40 4 295 - -
Cma01g01865 1175 SUPERFAMILY DPP6 N-terminal domain-like 574 790 - -
Cma01g01865 1175 SUPERFAMILY WD40 repeat-like 5 317 IPR036322 GO:0005515
Cma01g01865 1175 PANTHER ALPHA/BETA HYDROLASE FOLD PROTEIN-RELATED 495 1175 - -
Cma01g01865 1175 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Cma01g01865 1175 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Cma01g01865 1175 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Cma01g01865 1175 PANTHER PEPTIDASE S9 PROLYL OLIGOPEPTIDASE 495 1175 - -
Cma01g01865 1175 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Cma01g01865 1175 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Cma01g01865 1175 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Cma01g01865 1175 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Cma01g01865 1175 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Cma01g01865 1175 Pfam WD domain, G-beta repeat 112 148 IPR001680 GO:0005515
Cma01g01865 1175 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Cma01g01865 1175 Pfam Prolyl oligopeptidase family 954 1156 IPR001375 GO:0006508|GO:0008236
Cma01g01865 1175 Gene3D - 2 213 IPR015943 GO:0005515
Cma01g01865 1175 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Cma01g01865 1175 Gene3D - 214 323 IPR015943 GO:0005515
Cma01g01865 1175 SMART WD40_4 206 244 IPR001680 GO:0005515
Cma01g01865 1175 SMART WD40_4 109 148 IPR001680 GO:0005515
Cma01g01865 1175 SMART WD40_4 162 203 IPR001680 GO:0005515
Cma01g01865 1175 SMART WD40_4 256 295 IPR001680 GO:0005515
Cma01g01865 1175 SMART WD40_4 69 106 IPR001680 GO:0005515
Cma01g01865 1175 SUPERFAMILY alpha/beta-Hydrolases 899 1157 IPR029058 -
Cma01g01865 1175 Gene3D alpha/beta hydrolase 893 1163 IPR029058 -
Cma01g01865 1175 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01865 Cma-Chr1:12248300 Cma08g00343 Cma-Chr8:1961797 5.30E-13 dispersed
Cma17g00192 Cma-Chr17:1007778 Cma01g01865 Cma-Chr1:12248300 2.74E-14 dispersed
Cma01g01833 Cma-Chr1:12128277 Cma01g01865 Cma-Chr1:12248300 3.00E-21 transposed
Cma09g00236 Cma-Chr9:1011859 Cma01g01865 Cma-Chr1:12248300 3.06E-18 transposed
Cma09g00237 Cma-Chr9:1014298 Cma01g01865 Cma-Chr1:12248300 1.02E-19 transposed
Cma09g00238 Cma-Chr9:1015223 Cma01g01865 Cma-Chr1:12248300 3.75E-27 transposed
Cma16g00425 Cma-Chr16:2121975 Cma01g01865 Cma-Chr1:12248300 6.47E-46 transposed
Cma18g00325 Cma-Chr18:1739327 Cma01g01865 Cma-Chr1:12248300 1.22E-54 transposed
Cma01g01865 Cma-Chr1:12248300 Cma09g00211 Cma-Chr9:883504 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01865 - - bhj:120085177 1293.87