Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01868 ATGGCGGTTACTGACTTCTTCGTCGGAGAGATCGCGACTGAGCTTCTCAGAATGATGGTACAACTTTCCACAAAATCCTGCCTCTGTAAAACGACGGCAGCTCACATCGCCAATTCCATTCAACAAATATTGCCGATTATTGAGGAGATAAAGTACTCGGGGGTTGAATTGCCCGCTCATCGTCAATTTCAGTTGGATCGCTTCAGCGAGACTCTCAGAAAAGGCGTTGAGATTTCCGAGAAGGCTCTCCAATGCGGCCGATTGAACATTTACAGAAACTTGCAGCTCGCGAGGAAGATGGAGAAGCTCGAAAAGGATATCGACCGCTTCATTAACGGCCCTATGCAGGCGCATATACTGGCCGACGTACACCACATGAGATTCGAGACCACCGAGCGATTCGATCGGCTCGAAGGAAATTTGCTGGAACGGCGGCTCGAGTCAATGAAGATTAGGGCAGACGGTTCGGGAGAGGGAGGGTGGTGGATAGAGGAGGCGTTTAAGAGGGCGGAGGAGGAAGAAAGCTACGAGACTAATGTGCTGAATATAGGAATTGGATTGCGTGAGGCGAAGAAGGAATTGAAGGAGCTGGTGACTGGAAGGGACGATTTGACAGCGGTTGGGATTACTGGACTCGGCGGTTCGGGGAAGACGACTTTAGCTAGAGAATTCTGCAAAGATCCTGAAGTTCGAAGTTACTTTAAAGAGAAAATATTGTTCTTGACGGTGTCGCAGTCCCCTGATATTGATCAACTGAGGAGAACGATCTGGGGTTATGTAATGGGTAGCGATAGTTTGAATGCTTATGATCCGATTTCTCAAGGGAGGCCTGCAAATTCAGCTTTAGTGGTTCTGGATGATGTGTGGTCAATCTCAGTTCTTGAGAACCTCATTCCAAACATTCCTGGCTGCAAAACTCTTGTGGTTTCTCGATTCAAATTCTCTGAGGTTCTTCGTGCTACTTATGAAGTAGAGTTATTGAGGGAAAGTGAAGCAGTTGCTCTGTTTTGCCACTCTGCTTTTGGGCAATGGACCATTCCTTTCACTGCTAATCACAACTTGGTCAAACAGGTTGTGAATGAATGCAAATGCCTGCCTCTGGCTCTTAAAGTCATAGGAGCGTCTCTCAGAGGACAAAGCGAGATGTTCTGGAACACTGCAAAGACCAGGTTGTCGCGAGGTGAGCCTATTTGTGAGTCTCATGAGAACAAATTGCTTCGTAGAATGGCAATCAGTATTGATTGTCTCTCGAGTAAAGTGAGAGAATGCTTCCTCGATTTGGGATGCTTTCCCGAAGACAGAAAGATTCCTCTTGATATTCTCATCAATGTTTGGAAGGAGTTACACGATCTTGATGAAGAAGAAGCTCTTGCTGTCCTGTTCGAGTTATCTCAGAAGAATCTCCTTACTCTGGTGAAAGATGCACGCGGTGGTGACTTTTACAGCAGTTATTATGAGATGTATGTCACTCAACACGATGTCTTGAGGGACATTGCTCTTCATTTCAGTAGCCGGGAGAGTGTAAATGACCGCAAGCGATTGCTGATGCCAAAAACTGAAACGGAGCTTCCAAAAGAATGGTTAAGGAAATCAGATCAGCCATTCAACGCCCAACTGGTTTCTATTCACACAGGGGAAATGAAAGAAATGGATTGGACGCAGATGATATTTCCCGAGACCGAAGTGTTGATTCTAAACTTCTCGTCGAGTGAATATTTCTTGCCTCCTTTCCTTTGCAACATGCCGAAGCTGAGAACACTGGTTGTGCTAAACAACAATGCAGCACATGCAACTCTCAGCAATTTTTCTGTTTTTTCTAGTTTGACCAACTTGAAGAGCATCTGGCTGGAAAAAGTTTCCATCACACGACTAGTAGATAATTGCGTCCCATTGAAACATCTGAGGAAGATATCTCTTGTTTTCTGCAAGATTAACAACAGCCTCGACGAGTCGATGATAAATGTATCGCAGATCTTCCCGAGCCTTTCGGAACTCAAAATCAATTACTGCAATGACTTGGTTAAGCTACCTTCAAGCATTTGTGAGATGCAAAATCTCAAGTGTCTTTGTGCCACCAACTGTCATAGTCTGAGCCAACTGCCATCCAACTTTTGGAAGCTAAAGAATTTACAAATCTTGAGGCTTTTTGCTTGCCCACATCTCACAACTCTACCACCAGGCATTTGTGAACTCTCTTCTCTCAAGTACATTGACATTTCTCAATGTGTTAACTTGTTCAGACTTCCTGAAGAACTTGGTAAACTGGCAAACTTAGAGAAAATTGACATGAGAGAATGCCCACAGATCAGAGGACTACCCAGATCAGTTGTGTCCATGCAATCTCTCCATCACGTAATCTGTGAAGAAGACGTCTCGTGGGTGTGGGAGGATTTGAAGAATCACATGCCTAATCTCTACATTCAAGTGGCCGAGAAATGCTTCGATCTCGACTGGCTCAACGATTGA 2466 44.93 MAVTDFFVGEIATELLRMMVQLSTKSCLCKTTAAHIANSIQQILPIIEEIKYSGVELPAHRQFQLDRFSETLRKGVEISEKALQCGRLNIYRNLQLARKMEKLEKDIDRFINGPMQAHILADVHHMRFETTERFDRLEGNLLERRLESMKIRADGSGEGGWWIEEAFKRAEEEESYETNVLNIGIGLREAKKELKELVTGRDDLTAVGITGLGGSGKTTLAREFCKDPEVRSYFKEKILFLTVSQSPDIDQLRRTIWGYVMGSDSLNAYDPISQGRPANSALVVLDDVWSISVLENLIPNIPGCKTLVVSRFKFSEVLRATYEVELLRESEAVALFCHSAFGQWTIPFTANHNLVKQVVNECKCLPLALKVIGASLRGQSEMFWNTAKTRLSRGEPICESHENKLLRRMAISIDCLSSKVRECFLDLGCFPEDRKIPLDILINVWKELHDLDEEEALAVLFELSQKNLLTLVKDARGGDFYSSYYEMYVTQHDVLRDIALHFSSRESVNDRKRLLMPKTETELPKEWLRKSDQPFNAQLVSIHTGEMKEMDWTQMIFPETEVLILNFSSSEYFLPPFLCNMPKLRTLVVLNNNAAHATLSNFSVFSSLTNLKSIWLEKVSITRLVDNCVPLKHLRKISLVFCKINNSLDESMINVSQIFPSLSELKINYCNDLVKLPSSICEMQNLKCLCATNCHSLSQLPSNFWKLKNLQILRLFACPHLTTLPPGICELSSLKYIDISQCVNLFRLPEELGKLANLEKIDMRECPQIRGLPRSVVSMQSLHHVICEEDVSWVWEDLKNHMPNLYIQVAEKCFDLDWLND 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12270018 12273576 + CmaCh01G018680.1 Cma01g01868 287561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01868 821 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Cma01g01868 821 SUPERFAMILY RNI-like 566 805 - -
Cma01g01868 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 427 IPR027417 -
Cma01g01868 821 Gene3D - 413 498 IPR036388 -
Cma01g01868 821 Coils Coil 187 207 - -
Cma01g01868 821 PRINTS Disease resistance protein signature 206 221 - -
Cma01g01868 821 PRINTS Disease resistance protein signature 275 289 - -
Cma01g01868 821 PRINTS Disease resistance protein signature 362 376 - -
Cma01g01868 821 PRINTS Disease resistance protein signature 729 745 - -
Cma01g01868 821 PANTHER DISEASE RESISTANCE PROTEIN ADR1 7 818 - -
Cma01g01868 821 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 818 IPR044974 GO:0006952
Cma01g01868 821 Pfam NB-ARC domain 195 408 IPR002182 GO:0043531
Cma01g01868 821 Gene3D - 327 412 IPR042197 -
Cma01g01868 821 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 8 132 IPR008808 -
Cma01g01868 821 Gene3D Ribonuclease Inhibitor 540 806 IPR032675 -
Cma01g01868 821 Gene3D - 182 322 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01868 - - - csv:101210269 1379.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01868 Cma09g00205 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01868 Cma-Chr1:12270018 Cma05g01179 Cma-Chr5:9155012 7.56E-130 dispersed
Cma05g00767 Cma-Chr5:4494364 Cma01g01868 Cma-Chr1:12270018 4.69E-18 transposed
Cma05g01168 Cma-Chr5:9070436 Cma01g01868 Cma-Chr1:12270018 1.03E-22 transposed
Cma20g00938 Cma-Chr20:4654228 Cma01g01868 Cma-Chr1:12270018 3.09E-22 transposed
Cma01g01868 Cma-Chr1:12270018 Cma03g00994 Cma-Chr3:7005346 5.62E-106 wgd
Cma01g01868 Cma-Chr1:12270018 Cma09g00205 Cma-Chr9:850253 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g829 Blo01g01539 . Bda01g00559 . Bpe02g00418 . . Bma01g02289 . . Cma01g01868 Cma09g00205 Car01g01456 . . Cpe06g00140 . . . . . . . . . . . . . . . Cone4ag1553 Cone7ag1400 . . Lsi04g01596 Csa04g02374 . . . . . . . . . . Sed01g2631 Cmo01g01926 Cmo09g00199 . . . Car09g00173 . Cpe02g00159 Bhi09g03379 Tan01g4836 Cmetu07g2143 . Hepe01g1731 Mch11g0258 . Cla05g02001 Cam05g2152 Cec05g2169 Cco05g2217 Clacu05g2144 Cmu05g2014 Cre05g2140 . . Chy07g00103 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008490 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01868 Cma_Chr01 FPKM 28.219316 31.584574 20.515917 20.695818 29.497799 33.19857 32.598808 32.569122 31.043682 33.497383