Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01874 ATGAAAGGCTCGGGCTGCTGTTTGTTCTTTTCTCTTCTTCTTCTCCAATCTTTTTCGTTTTTCGCTTCGGCTCTTTCCGATACCGAAGCGTCGTTCATTGCCCGCCGCCAGCTTCTAACCTTTCTCGAGACCGATGATTTGCCCGACGATTACGAGTCCACGGTTGTGGTGACTGAAACCTTTCCCAATTCCAGGCTCCGACGGGCTTTCATTGCCCTTCAAGCCTGGAAGAGGTCCATTTATTCCGACCCTTTAAACACCACCGCCAATTGGGTCGGCGCCGATGTCTGTTCCTACACCGGAGTTTTCTGTACCTCTGCTCTGGACGACCCCAATGTCCAAGTCGTGGCCGGAATTGACCTCAACCATGCCGACATCGCCGGTTACCTCCCCGTTGAGCTCGGTCTACTGTCGGACATCGCATTGTTTCACATCAACACCAACCGGTTCTGCGGCCTTGTCCCGCCGAGCTTCGAGAGGATGATTCTCCTTCACGAGCTTGACGTTAGCAACAACAGATTTGTGGGCCCTTTTCCTGAAGTCGTTTTGAGGATTCCGAATTTGAAATTTCTGGACATTAGATTCAACGATTTCGAAGGGAAATTGCCTCCTGCCCTTTTCACCAAGGAGCTCGATGCCATTTTCCTCAATAACAACAGATTCACCTCCCACATTCCTGAGAGTTTCGGCGACTCGCCGGCGTCGGTGATCGTGATTGCCAATAACAACTTCACAGGGTGCATTCCGACAAGCATTGGGAAAATGGGGAACACGTTGAACGAGGTTTTAATGTTGAACAATGCGCTTGGTGGTTGCATCCCTGGTGAGCTTTCTCTGCTTGGAAATGCGACGATTTTCGATGTTTCTTCGAATCAATTGAGTGGGAGCTTGCCGATGAGCTTACATGGGTTGAAGAATGTGGAAATTATTGACGTTTCTTCCAATAGTTTGACCGGTGTGGTGCATGGAGGCTTGTGTAATTTGCCTAAATTGGCTGAGTTCACATTCGCTGATAATTTGTTTGATGGCGAAGACACTAGGTGTGTGCCTCAGAATAGACAGGATGTTTGGTTGGATGATGCTGACAATTGTTTGCAAGGGAGGCCTAAGCAAAAACCGGCGGAGACTTGTAGTTCAGAGATCACAAAGGCCGTGGATTGCAGTCGGGTTAAGTGCGGCGGAGGATCCACACCTCCTAAGCAGCCAGAGGCACCAATTGATGATCCTCATCGTCAATCACATGTCCCAATGAACCACCCTCCTCCTCCACCTGTAATCAACTCGCTCCCACCACCACCTCCGGTCGCCTCACCCCCACCACCACCTCCGGTCGCCTCACCCCCACCACCACCTCCGGTCGCCTCACCCCCACCACCACCTCCGTTGCCTCACCCCCACCACCGGTTCACTCTCCACCCCCACCCCCTCACCCCCACCACCCGTAGCCTCTCCACCACCACCTTCTCCATCTCCTCCTCCAGTCTCCTCTCCACTGCCACCACTAGAGGACATCGTTCTTCCACCAAATTTGGGCTTCGAGTACTCATCACCGCCTCCACCATTCTTCCCAGGCTACTAAATAAAATGTGA 1590 52.08 MKGSGCCLFFSLLLLQSFSFFASALSDTEASFIARRQLLTFLETDDLPDDYESTVVVTETFPNSRLRRAFIALQAWKRSIYSDPLNTTANWVGADVCSYTGVFCTSALDDPNVQVVAGIDLNHADIAGYLPVELGLLSDIALFHINTNRFCGLVPPSFERMILLHELDVSNNRFVGPFPEVVLRIPNLKFLDIRFNDFEGKLPPALFTKELDAIFLNNNRFTSHIPESFGDSPASVIVIANNNFTGCIPTSIGKMGNTLNEVLMLNNALGGCIPGELSLLGNATIFDVSSNQLSGSLPMSLHGLKNVEIIDVSSNSLTGVVHGGLCNLPKLAEFTFADNLFDGEDTRCVPQNRQDVWLDDADNCLQGRPKQKPAETCSSEITKAVDCSRVKCGGGSTPPKQPEAPIDDPHRQSHVPMNHPPPPPVINSLPPPPPVASPPPPPPVASPPPPPPVASPPPPPPLPHPHHRFTLHPHPLTPTTRSLSTTTFSISSSSLLSTATTRGHRSSTKFGLRVLITASTILPRLLNKM 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12291107 12293909 - CmaCh01G018740.1 Cma01g01874 287567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01874 529 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Cma01g01874 529 MobiDBLite consensus disorder prediction 415 466 - -
Cma01g01874 529 Gene3D Ribonuclease Inhibitor 70 366 IPR032675 -
Cma01g01874 529 MobiDBLite consensus disorder prediction 389 484 - -
Cma01g01874 529 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 3 468 - -
Cma01g01874 529 SUPERFAMILY L domain-like 71 367 - -
Cma01g01874 529 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01874 Cma-Chr1:12291107 Cma08g00898 Cma-Chr8:5563777 1.73E-141 dispersed
Cma11g00660 Cma-Chr11:3212093 Cma01g01874 Cma-Chr1:12291107 4.40E-101 dispersed
Cma01g01874 Cma-Chr1:12291107 Cma09g00199 Cma-Chr9:826607 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01874 - - cmax:111480794 808.135