Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01875 ATGCATCTTTCACTATGGAAGCCCTTGTCCCATTGCGCCGCTTTAATCATGGACAAGAAATCCAGACGGCGACATGGGTCTGGTCTTACAGAGAGGCGCAAATCCTCCATTCTCAGGCAATTGCAAGAAAACAAGCTCAGAGAGGCTCTTGAGGAAGCTTCTGAAGATGGGTCTTTGGCGAAATCCAGAGACATTGACTGTGATTCGCCAAATCACGACGGGAATGTTCGACGGTCGAGATCTCTCGCTCGGCTTCATGCCCAGAAGGAGTTTCTACGCGCCACCGCACTCGCCGCCGACCGAACCTATTCCACGGAGGATTTGATTCCGAATCTTTTCGACGCCTTCACCAAGTTCCTCACCATGTACCCGAAATTCCAGTCGTCGGAACAAATCGATCAATTAAGAACAGAGGATTACGAGCATTTATCAGAGTCGTTTTCGAAGGTATGTCTTGATTACTGTGGGTTTGGTTTATTTTCGTATATTCAAACTCAACAATTCTGGGAGTCTTCTGCGTTTACTCTCTCGGAAATCACTGCCAATTTGAACAACCACGCCCTTTACGGCGGCGCCGAGAAAGGCACAATTGAACACGACATCAAGACACGGATTATGAATTACCTTAACATTTCCGAGAATGAATATGGGCTTGTTTTTACAGTCAGTAGGGGGTCAGCTTTTAAGCTCTTGGCCGAGTCGTATCCTTTTCATACGAATAAGAAATTGTTGACCATGTTTGATCATGAGAGTCAATCTGTGAGTTGGATGGCTCAGAATGCTAAAGAAAGAGGTGCAAAGGTTTACAGTGCTTGGTTTAAGTGGCCAACTTTAAGACTCTGTTCAAGGGAGCTCAGGAAACAGATCACAAACAAGAGGAAGAGGAAGAAGGATTCTGTTTCTGGGCTTTTTGTGTTTCCTGTTCAGTCAAGAGTTACAGGAGCAAAGTATTCTTACCAATGGATGGCTCTTGCCCAGCAGAACAATTGGCACGTCTTGCTCGATGCTGGCTCGCTTGGTCCGAAGGACATGGATTCCTTGGGGCTCTCCCTCTTTAGGCCAGATTTTATAATCACGTCGTTTTATCGTGTTTTCGGATCTGATCCGACTGGTTTTGGCTGCCTGTTGATTAAGAAATCTGTTATAGGGAGCTTGCAAAGTCAATGTGGGCGGACAGGTACAGGAATGGTGAGGATACTGCCTATTTTCCCGCAGTACATCGGCGATTCGATCGATGGTTTGGATGTGTTGGCTGGGATTGAAGATGATGCTATCAATGGTCAGGAGGATTCTGAAACTGAGACGCATCAGGAGTCACGAATGCCTGCTTTTTCGGGCGTGTTTACGACGAACCAGGTGAGGGATGTGTTTGAGACTGAGATTGAACAAGATAATAATAGCTCGGACAGGGATGGAGCTAGTACCATTTTTGAGGAAGTTGAGAGCATTTCGGTTGGGGAGGTTATGAAGAGTCCGATCTTCAGCGAGGACGAGTCGTCGGATAATTCATATTGGATTGATTTGGGACATAGTCCATTTGGTTCTGATAATTCTGGCCATTTGATTAAGCAAAAAACATGGTCATCACCCTTACCACCATCTTGGTTTTCTGGTAAGAGGAACAGTAGGCAACTTTCACCAAAACCAGCATCGAGGTTGTTGAGAAGTCCGATATGTGGTGGTGATGATAAGCGGGCGAATCCAAGGCACCGTGACGATTCGGTATTGTCGTTTGATGCAGCTGTATTATCAGTGTCGCAGGATCTATGTCGGGTGGAGGGGATTCCTGAAGAAGAACAATCTGGAGAACAAGACTCCTGCTGTGGCAATGTTGGAAGCTTGAAAGATTCTCATGCTGTTAGTGAGATTCAGGAGGATTCAGAAACTGGAGAAGAATCGATCTCGAATAGGTTGAGTTTCGCCTCGAATGGAAACCGATCTGCGAATCAGACTTTCGAGATTCAGGATTTGAAGCTTTCAAATTCCACAGCAGCTGGAGCCTTAAAAGACTTGAAGGAAAGTGCTATAAGGAGGGAGACAGAAGGGGAATTCAGACTCTTAGGTCGGAGGGAAAGGAGTAGGTTTTCCGAACGTGGATTCTTCGGTTTAGACGGAGAAAGAGCGCTTAGCATGGGTCGCCGAGTATCATTTAGTGTAGAATATAATGAAAAAGAAAGCTTGAATGAGATGTTTGAGCTCGGAGAAGCATCTAATGCAGCTTTTGACAATGAGGAATCGATGAGTGATGGAGAGTACGTTGACGAGCAAGAATGGGGAAGGAGGGAGCCCGAAATGATCTGTCGACATCTCGATCATATCGATATGTTAGGCCTCAACAGGACCACTCTCCGACTGAGGTATCTCATTAACTGGCTCGTCACTTCATTACTTCAACTCCGACTACCGGGTCGAGACGATGTAGGAACTCACCTTGTACAACTGTATGGACCGAAGATCAAATACGAACGAGGTGCTGCGGTTGCTTTTAATGTAAAAGAAAGCAATGGAAGAGGGCTAATTCATCCGGAAGTTGTACAGAAACTGGCTGAAAATAATGGAATATCTCTTGGAGTTGGTATCCTCAGCCATGTCCGTGCAGTCGACGTTCCGAAGCAGAACTCCGGTCAGTATGATCTCAAAGACATGGCATTGTGCAAACCAATGGCTAATGGTCACAACAGGAAGAAACTATTTTTTCGAGTCGAGGTCGTCACAGTATCGCTCGGATTCCTTACCAACTTTGAAGATGTTTATAAAATGTGGGCTTTTGTAGCCAAGTTTCTGAATCCATCTTTTCTGGAAAGCAGTACATTGTCTTCCGGCCCCGAGACTTCAGAATCATAA 2844 45.64 MHLSLWKPLSHCAALIMDKKSRRRHGSGLTERRKSSILRQLQENKLREALEEASEDGSLAKSRDIDCDSPNHDGNVRRSRSLARLHAQKEFLRATALAADRTYSTEDLIPNLFDAFTKFLTMYPKFQSSEQIDQLRTEDYEHLSESFSKVCLDYCGFGLFSYIQTQQFWESSAFTLSEITANLNNHALYGGAEKGTIEHDIKTRIMNYLNISENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDHESQSVSWMAQNAKERGAKVYSAWFKWPTLRLCSRELRKQITNKRKRKKDSVSGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGSDPTGFGCLLIKKSVIGSLQSQCGRTGTGMVRILPIFPQYIGDSIDGLDVLAGIEDDAINGQEDSETETHQESRMPAFSGVFTTNQVRDVFETEIEQDNNSSDRDGASTIFEEVESISVGEVMKSPIFSEDESSDNSYWIDLGHSPFGSDNSGHLIKQKTWSSPLPPSWFSGKRNSRQLSPKPASRLLRSPICGGDDKRANPRHRDDSVLSFDAAVLSVSQDLCRVEGIPEEEQSGEQDSCCGNVGSLKDSHAVSEIQEDSETGEESISNRLSFASNGNRSANQTFEIQDLKLSNSTAAGALKDLKESAIRRETEGEFRLLGRRERSRFSERGFFGLDGERALSMGRRVSFSVEYNEKESLNEMFELGEASNAAFDNEESMSDGEYVDEQEWGRREPEMICRHLDHIDMLGLNRTTLRLRYLINWLVTSLLQLRLPGRDDVGTHLVQLYGPKIKYERGAAVAFNVKESNGRGLIHPEVVQKLAENNGISLGVGILSHVRAVDVPKQNSGQYDLKDMALCKPMANGHNRKKLFFRVEVVTVSLGFLTNFEDVYKMWAFVAKFLNPSFLESSTLSSGPETSES 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12297209 12300052 + CmaCh01G018750.1 Cma01g01875 287568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01875 947 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 32 946 - -
Cma01g01875 947 MobiDBLite consensus disorder prediction 532 549 - -
Cma01g01875 947 PANTHER OS03G0765800 PROTEIN 32 946 - -
Cma01g01875 947 Gene3D Aspartate Aminotransferase, domain 1 763 933 IPR015422 GO:0003824
Cma01g01875 947 MobiDBLite consensus disorder prediction 558 572 - -
Cma01g01875 947 SUPERFAMILY PLP-dependent transferases 150 392 IPR015424 -
Cma01g01875 947 Gene3D - 170 437 IPR015421 GO:0003824
Cma01g01875 947 MobiDBLite consensus disorder prediction 532 572 - -
Cma01g01875 947 MobiDBLite consensus disorder prediction 52 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01875 - - - bhj:120087021 1696.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01875 Cma09g00198 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01875 Cma-Chr1:12297209 Cma07g00730 Cma-Chr7:3225429 0 dispersed
Cma01g01875 Cma-Chr1:12297209 Cma03g01006 Cma-Chr3:7051627 0 wgd
Cma01g01875 Cma-Chr1:12297209 Cma09g00198 Cma-Chr9:822675 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g837 . Blo12g00938 Bda01g00558 Bda03g00231 Bpe02g00415 Bpe04g00196 Bma04g00183 Bma01g02291 . . Cma01g01875 Cma09g00198 Car01g01461 . . Cpe06g00135 . . . . . . . . . . . . . . . Cone4ag1547 Cone7ag1404 . . Lsi04g01604 Csa03g04151 Chy04g00569 . . . . . . . . . . Cmo01g01933 Cmo09g00193 . . . Car09g00167 . Cpe02g00153 Bhi09g02024 . . . . Mch11g0244 . Cla05g01995 Cam05g2146 Cec05g2161 Cco05g2209 Clacu05g2137 Cmu05g2009 Cre05g2134 . . . Cme04g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005433 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01875 Cma_Chr01 FPKM 2.560478 3.620115 0.444053 0.482243 10.88163 10.553492 10.647147 0.069486 0.084867 0.156932