Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01876 ATGATGGAGACGGAGTCTTGCCAGTTGATGGTGACTTCCAGGCGGCCTTGCTTTTATGCTTTCTATTCCTCCACTCTTTGTTCAGAACGACTGAAACTTCCTTTGAAATTTGTCAGATACTTAGGAGAAATAATAGGCCAATCAGTCTCATTAATTGGTCCTAGCGGCCATACTTGGCTTGTTGACTTGATCCAGCAGAATGATAACTTGTTCTTCTGTGACGGATGGCCAACCTTTGCTCGAGATAATTCCCTAGAATGCGGTGATTTCTTGGTATTTAGATATGATGGCGAGTTGAATTTCACTCTGCAAGTTTTTGATCAGAGTGCATGTGAGAAAGAAGATGCATTTCATTCTCAGTGCAGTCAAGATAACACAGGCCATAAAAGAGATAGGGAAGAGGACCCTACATGCCCAGATACATGTGCAGAGGCTGTGGCAAAGAAAATGAGGAGCATTTTTTATGTTCATTCAGAGTGCAGGGAGGGCCTAGCAGCCATAAAAACTGTTGAGGTCCATAAAAATGGAGCTGGTCAGAATGGGATCAGTAAAGTTGATGACGTAACTATGCAAGATAAAATTCTGGCCTTATCACTATTATCTCAGGATGAGAAAAAAATTTCCCAGTCATTTAGCTCCAATTATCCATATTTTGTGAGAATCATGAAAAGCTTCAATGTTCGTGGTTCATACACATTGAATATCCCTTATCAATTTTCTATGGCACATCTTCCTAGCTGCAAATTAAAGTTGGTCCTTCACAACTTGAAAGGGGAATCCTGGCCAGTGAATTCTGTTCCTACAATAAGAGTGCATACAAGTCATACCCTTTGTGGAGGATGGATGGCCTTTGTGCGTGGGAATGATATCAACATGGGAGATATATGTGTTTTTGAGCTTGTCCTGGATTGTGAATTGCGTGTTCGCATCTTCAGGGTTGGAAAGGAAATATCTGAGGATCAAAGTAGAAAAGGATCTTTGAATCAGCTAGATGCTGACCATGCAAAAATATCTCGTAAAACTCTCAAAGGTTTGCCAAAGAAAATGAATGGAAACTCTCACAAGGTTCATTCAAAATGCCCCAAAAGAATTGAAGTACATGATAAAAAAAGTTCGAAGTCTTGGCAAGAACCTTTCTGCAATGATGTTAGGAAACATTCTAGTGCAAAAAAGGTCTCCACCAAAGTCGTGGTTTGTTCTCAATCAAAAAAGCCTTCTAAGCGTTTGGTCAATCAGGGAACCAGTGTCAAAGGCGATCTTGTATTACCAGCTAGACTTGGGTTGCGAGCAATGTTAGCACTTGATGAAGAAAGAGCAGCTAAGTCATTTGCTTCTTGTTTTCCAACTTTTGTCAGAATCATGAAAAAGTTCAACACTAGTGGTTCATATACTTTAAAAATTCCGCATCAGTTTTCTTCGGTACATTTCCCTAACAGCAAAACTGAGATTATACTTCGCGGTCCAAATGGAGGATGTTGGATTGTGAACTCAGTACCAGACTCAATGGGGCGAATGATGCATACTTTTTGCGGCGGTTGGATGTCGTTTGTTCGCGACAATGGTATCCAGATGGGGGATATCTGCATTTTTGAACTTGTTGGCAAGTGTGAATTGCTTGTACATGTGACCGGAGTTGGGAAGAAAGGGTTTAACCTCAGCAGTGAAGTCGCAACTTGTAGTGAATTAGCAATTGTACCAACAACAAGCAATCATCCTTCTCTGTTTGTTCTTCCGAAGCCACATCAAAGATCCCAATGCAGCAAGGGATATGCTCAAAACCTGAATTGA 1788 40.88 MMETESCQLMVTSRRPCFYAFYSSTLCSERLKLPLKFVRYLGEIIGQSVSLIGPSGHTWLVDLIQQNDNLFFCDGWPTFARDNSLECGDFLVFRYDGELNFTLQVFDQSACEKEDAFHSQCSQDNTGHKRDREEDPTCPDTCAEAVAKKMRSIFYVHSECREGLAAIKTVEVHKNGAGQNGISKVDDVTMQDKILALSLLSQDEKKISQSFSSNYPYFVRIMKSFNVRGSYTLNIPYQFSMAHLPSCKLKLVLHNLKGESWPVNSVPTIRVHTSHTLCGGWMAFVRGNDINMGDICVFELVLDCELRVRIFRVGKEISEDQSRKGSLNQLDADHAKISRKTLKGLPKKMNGNSHKVHSKCPKRIEVHDKKSSKSWQEPFCNDVRKHSSAKKVSTKVVVCSQSKKPSKRLVNQGTSVKGDLVLPARLGLRAMLALDEERAAKSFASCFPTFVRIMKKFNTSGSYTLKIPHQFSSVHFPNSKTEIILRGPNGGCWIVNSVPDSMGRMMHTFCGGWMSFVRDNGIQMGDICIFELVGKCELLVHVTGVGKKGFNLSSEVATCSELAIVPTTSNHPSLFVLPKPHQRSQCSKGYAQNLN 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12301265 12306069 + CmaCh01G018760.1 Cma01g01876 287569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01876 595 ProSiteProfiles B3 DNA-binding domain profile. 218 314 IPR003340 GO:0003677
Cma01g01876 595 SMART B3_2 18 109 IPR003340 GO:0003677
Cma01g01876 595 SMART B3_2 450 548 IPR003340 GO:0003677
Cma01g01876 595 SMART B3_2 218 314 IPR003340 GO:0003677
Cma01g01876 595 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 342 560 IPR044837 -
Cma01g01876 595 CDD B3_DNA 448 542 IPR003340 GO:0003677
Cma01g01876 595 CDD B3_DNA 216 312 IPR003340 GO:0003677
Cma01g01876 595 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Cma01g01876 595 SUPERFAMILY DNA-binding pseudobarrel domain 12 111 IPR015300 -
Cma01g01876 595 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 326 IPR044837 -
Cma01g01876 595 SUPERFAMILY DNA-binding pseudobarrel domain 211 313 IPR015300 -
Cma01g01876 595 Gene3D - 201 315 IPR015300 -
Cma01g01876 595 Gene3D - 434 547 IPR015300 -
Cma01g01876 595 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 342 560 - -
Cma01g01876 595 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 10 326 - -
Cma01g01876 595 Gene3D - 9 111 IPR015300 -
Cma01g01876 595 CDD B3_DNA 23 107 IPR003340 GO:0003677
Cma01g01876 595 Pfam B3 DNA binding domain 23 108 IPR003340 GO:0003677
Cma01g01876 595 Pfam B3 DNA binding domain 450 541 IPR003340 GO:0003677
Cma01g01876 595 Pfam B3 DNA binding domain 218 312 IPR003340 GO:0003677
Cma01g01876 595 SUPERFAMILY DNA-binding pseudobarrel domain 445 544 IPR015300 -
Cma01g01876 595 ProSiteProfiles B3 DNA-binding domain profile. 450 546 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01876 - - - csv:101214902 890.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01876 Cma12g00508 CCT
Cma01g01876 Cma09g00197 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01876 Cma-Chr1:12301265 Cma07g00732 Cma-Chr7:3232352 8.94E-15 dispersed
Cma01g01876 Cma-Chr1:12301265 Cma12g00508 Cma-Chr12:2623724 1.50E-25 wgd
Cma01g01876 Cma-Chr1:12301265 Cma03g01009 Cma-Chr3:7061655 1.74E-14 wgd
Cma01g01876 Cma-Chr1:12301265 Cma05g00211 Cma-Chr5:895677 1.35E-11 wgd
Cma01g01876 Cma-Chr1:12301265 Cma09g00197 Cma-Chr9:818210 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34375 PF02362 B3 3.40E-12 CL0405 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01876 Cma_Chr01 FPKM 2.04618 2.627441 4.365983 3.690857 4.960581 5.778636 6.780095 5.186431 5.064427 5.488798