Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01879 ATGTTTCTGACCTCCAACGCCCTACTCATGAACCCGCCGGACCTCTCCTTGCACATCAGCCTCCCCTTCTTCGCCCCGCCCTCTCACAATTCTGATTTGACCCATCAAAATGGTTTCTTCCGCTTAGGATATGAACCGGGCCATGTGGGTCGTCCTCGTTCTCGTCACCAAGCTTATAACGTCGTCCATGGCCGCCGCCGTGACTTTAAACGAAGTGGTGGCGGGTGTGGAGTGAGAAGAAGCATCCGAGCTCCTAGAATGAGATGGACTACGACGCTTCATGCTCATTTTGTACACGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACTCCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTTCCGAACAGTGAAGAACAGTGTGAAGAAGGGAACAGACGATTATGGAAGGCCTGAGATTGAAGCAGATGGGGTTTTATCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCATCATCTTCTTTATCTGTGTGCAGAGGCAATAGTTGCGAGAGGACCAACTCAAACGGTGACGTTTTGCAAAGGATTAATTTAGAGTTCACTCTTGGAAGACCTAAAATGAATGCCGGGAATGAAGGTGCTCCTACATGCCCCCATGTCCATGCCCATGCCCATTTCTTGGCCATCTTCACCTTTGAGATTACCGCCCCAACCCCGCGGTGTTGGCCGGTCATCGGCCACCTCCCTTTACTAACTGCAAAAGAACCAACTCACACCGCGTTGGGAAAATTGGCCCACGTTTATGGACCAATCTTCATGTTAAGATTAGGCGCCCACCGAACCTTGATTGTGAGCGGCTGGGAGGTGGCAAGGGAGTGCTTAACTGTGAACGACAAAGCATTTGCCTCCCGCCCCAAGTTTGCTGCCGCACAGCTACTTGGCTATGATTATGCCATGTTTGCGCTAAGCCAATACGGATCACACTGGAGCCATTTGCGTAAGATAGCCACGCTTGAACTCCTCGCCAACCATCGACTTGAGAAGCTTAAACACATCCTAACATCAGAGGTTCAAAGCTCGATCCAGAAACTACACCAGCTCTGCAAATTAAGTGATGGAGGCAAGAAAGCGTTGGTGGAGATGGAGACGTGGTTCGGAGAAATAGCGCTGAATACCATATTCAGGATGGTGGTCGGAAAACGATTCACCACTGCTTTTGAAGGTAGCGGCGGGGCATTGTATCGGCACGCGTTGGAGGATTTTTTTAGTTTGTTTACAGCGTTTGTTCCGTCGGATTTGTTTCCGTTCCTAAAATGGTTCGACTTTGGAGGTCATAAGAAGGCCATGAAGAAGACGGCAAAGGTGCTGGACGAGATGCTTGATAAATGGCTCACAGAGCATCGTGAGAGGAGAAATTCCGGCGAAGTGGAGCCGGAAGAGCAGGATTTCATGCACGTTATGTTGTCTTTAATCGACAATGAAGAGTTTTCCGGCTACGATGCCGACACGATCATCAAATCTACCTGTTTGGCTCTGATATTGGGGGGATTTCACACCACCACCACTGAAATGACTTGGGCTCTTTCTTTACTCCTCAATCGTGAAGAAGCATACGAGAAGGTTCAAAAGGAATTAGACGAACATGTTGGGAGAGACAGGGTAGTGAGAGAATCGGATCTGAAAAATTTGATATATCTCCAAGCTGTTGTGAAAGAAACATTGCGTATGTACCCAGCAGCACCGCTCTCGGTCCCTCATGAATCTACGGAAGATTGTATAGTTGCTGGGTATCACATCCCAGCAAAGACACGACTGTGGGTGAATCTTTATAGGCTCCAAAGAGATCCAAGCGTTTGGGAGAATCCTAACGAATTTTGTCCCGAGAGGTTTTTGACAACTCAAAAGGAGTTTGATGTTAAAGGACGAAATCCCCAATTGATACCGTTTGGTGTTGGTCGAAGAATTTGCCCTGCGGTGACTTTTGCCCTCCAAGTTTTGCACTTGTCGCTTGCGAGGCTTCTTCATGAGTTTGAAATTGGACGACCATCCGAAGAGCCACTCAATATGGAAGAAATTGCTGCATTGAACATTACTAAGAAAATCCCTCTTCAAGTTGTCTTAGCTTCGCGTCTCTCTACTAAGGTTCATGGACGTGTGTGA 2166 47.55 MFLTSNALLMNPPDLSLHISLPFFAPPSHNSDLTHQNGFFRLGYEPGHVGRPRSRHQAYNVVHGRRRDFKRSGGGCGVRRSIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMFRTVKNSVKKGTDDYGRPEIEADGVLSSSSSSSSSSSSSSSLSVCRGNSCERTNSNGDVLQRINLEFTLGRPKMNAGNEGAPTCPHVHAHAHFLAIFTFEITAPTPRCWPVIGHLPLLTAKEPTHTALGKLAHVYGPIFMLRLGAHRTLIVSGWEVARECLTVNDKAFASRPKFAAAQLLGYDYAMFALSQYGSHWSHLRKIATLELLANHRLEKLKHILTSEVQSSIQKLHQLCKLSDGGKKALVEMETWFGEIALNTIFRMVVGKRFTTAFEGSGGALYRHALEDFFSLFTAFVPSDLFPFLKWFDFGGHKKAMKKTAKVLDEMLDKWLTEHRERRNSGEVEPEEQDFMHVMLSLIDNEEFSGYDADTIIKSTCLALILGGFHTTTTEMTWALSLLLNREEAYEKVQKELDEHVGRDRVVRESDLKNLIYLQAVVKETLRMYPAAPLSVPHESTEDCIVAGYHIPAKTRLWVNLYRLQRDPSVWENPNEFCPERFLTTQKEFDVKGRNPQLIPFGVGRRICPAVTFALQVLHLSLARLLHEFEIGRPSEEPLNMEEIAALNITKKIPLQVVLASRLSTKVHGRV 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12314351 12319646 + CmaCh01G018790.1 Cma01g01879 287572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01879 721 PANTHER CYTOCHROME P450 243 717 - -
Cma01g01879 721 MobiDBLite consensus disorder prediction 144 185 - -
Cma01g01879 721 PRINTS P450 superfamily signature 649 658 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS P450 superfamily signature 570 581 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS P450 superfamily signature 517 534 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 SUPERFAMILY Cytochrome P450 239 712 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 Gene3D - 84 141 - -
Cma01g01879 721 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 85 138 IPR006447 GO:0003677
Cma01g01879 721 MobiDBLite consensus disorder prediction 159 185 - -
Cma01g01879 721 Pfam Cytochrome P450 239 701 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 506 523 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 658 681 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 390 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 267 286 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 610 634 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 648 658 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 526 552 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 291 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PRINTS E-class P450 group I signature 569 587 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 651 660 IPR017972 GO:0005506|GO:0016705
Cma01g01879 721 Gene3D Cytochrome P450 237 718 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01879 721 PANTHER CYTOCHROME P450 82C3-RELATED 243 717 - -
Cma01g01879 721 SUPERFAMILY Homeodomain-like 82 141 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01879 - - - csv:101208091 702.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01879 Cma09g00193 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01879 Cma-Chr1:12314351 Cma01g01881 Cma-Chr1:12325303 0 dispersed
Cma09g00194 Cma-Chr9:809303 Cma01g01879 Cma-Chr1:12314351 1.30E-63 dispersed
Cma10g00905 Cma-Chr10:4497265 Cma01g01879 Cma-Chr1:12314351 1.30E-09 dispersed
Cma01g01879 Cma-Chr1:12314351 Cma01g01880 Cma-Chr1:12321737 0 tandem
Cma01g01879 Cma-Chr1:12314351 Cma12g00506 Cma-Chr12:2616517 1.51E-40 wgd
Cma01g01879 Cma-Chr1:12314351 Cma05g00213 Cma-Chr5:902076 9.09E-38 wgd
Cma01g01879 Cma-Chr1:12314351 Cma09g00183 Cma-Chr9:770192 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g842 . Blo12g00935 . . . . . . . . Cma01g01879 Cma09g00193 . . . . . . . . . . . . . . . . . . . . Cone7ag1411 . . . . Chy04g00562 . . . . . . . . . . . Cmo09g00189 . . . . . . . . . . . . . Cla05g01989 . . . . . . . . . Cme04g00671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34376 PF00067 p450 1.50E-90 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01879 Cma_Chr01 FPKM 11.035391 11.327799 2.848076 2.800077 7.991323 7.750833 8.509276 0.109857 0.0 0.054901