Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01881 ATGAGAGAGATGGAACTTCCTCACACCTCCTCATCGGCCGCCGTCGCCGGAATCTTCACCCTTCTCATCTTCCTCTATGCCCTCTTCAACATATCTACAAAACTCAGCTCTAATCCAAAAAGACTCCCACCGGAACCCGCCGGAGCTTGGCCGGTGATCGGCCACCTCCATCTACTAAGCACAACAGAGCCAGCCCACATAACGTTGGCCAAAATGGCGGATGTGTACGGACCAATCTTTACACTGAAGTTGGGCATGCACAGAACCTTGATTGTAAGCAGCTGGGAGATAGCCAGGGAATGTTTCACGACAAAAGACAGAATCTTTGCCTCTCGACCAAAGCTTGTCGCCTCAAAGCTGCTTGGTTATAACTATGCCATGATGGGGTTGAGCCCCTATGGCTCGCACTGGCGCCATGTTCGTAAAATGGCCACCCTCGAGCTCTTCACGAACCACCGCCTGCAGCAGCTCCAACACGTTAGGGTATCGGAGGTTGAAAGTTCGATTAAGAAGCTGTATGAGTTATGTGGCAATGGAAAGGAGAAAGCTTTGGTGGATATGAAGACGTGGTTTGGTGATATTACTCTCAATACCATATTCAGAGTAGTGGTCGGAAAACGATTCTCGACGGCGGTGGAGGGTGGCGGTAATGAAGAGTATCGGAAGGCGTTGAGGGAATTCTTTGAATGGTTTGGAGTGTTTGTTCCTTCGGATTCATTTCCGTTTCTTAAATGGTTGGATTTGGGAGGACATGAGAAGGCCATGAAGAAGACGGCGGAGGTTTTGGATGAAGTGTTGGATAAATGGGTGGAAGAGCGTCGGAAAATGAGAGCTTCCGATGAAGCGAAGACGGCGGAGCATGATTTCATGGATGTCATGCTTTCTGGTGTTAAAGATTATGAAGAACTTTCGAGCTATGAGGCTAATACCGTAATCAAATCCACGTGTTTGGCACTTATATTGGCGGGTTCGGATACGACGACAGTTACAATGGTATGGGCTCTTTCTTTACTACTCAACAATCCTGAAGCACTTAAGAAAGCTCAACTTGAATTAGATGAACACGTTGGGAGAGAAACACACCTGAAAGAATCCGACGTGAAAAATCTTGTATATCTCCAAGCAATTGTGAAGGAAACATTACGTTTGTATCCTGCTGGGCCACTTGGCATCCCTCATGAATCTATAGAGGATTGTACTATTAATGACTACCATATTCCGGCGGGGACACGTTTGATGGTAAACATTCAGAAACTTCAAAGAGACCCACAAGTATGGGAAGATCCTAGTGAATTTCGACCAGAGAGATTTTTAACAAGTCACAGAGATTTCAATTTTAGAGGACAAACTCCTGAGTTTATACCCTTTGGAAACGGAAGAAGGATGTGTCCTGGAATCTCATTTGCCCTTCAAATTATGCATTTAACGCTCGCAAATTTGCTTCATGAGTTTGAAATTGATAGGCCATCTAAAGAGTTATTGAATATGGAAGAAAGCGCTGGTATGACGAGTATTAGAAAGGATCCACTCGAGGTGGTTTTAAGGCCACGTCTCCGTCTTTGA 1563 45.55 MREMELPHTSSSAAVAGIFTLLIFLYALFNISTKLSSNPKRLPPEPAGAWPVIGHLHLLSTTEPAHITLAKMADVYGPIFTLKLGMHRTLIVSSWEIARECFTTKDRIFASRPKLVASKLLGYNYAMMGLSPYGSHWRHVRKMATLELFTNHRLQQLQHVRVSEVESSIKKLYELCGNGKEKALVDMKTWFGDITLNTIFRVVVGKRFSTAVEGGGNEEYRKALREFFEWFGVFVPSDSFPFLKWLDLGGHEKAMKKTAEVLDEVLDKWVEERRKMRASDEAKTAEHDFMDVMLSGVKDYEELSSYEANTVIKSTCLALILAGSDTTTVTMVWALSLLLNNPEALKKAQLELDEHVGRETHLKESDVKNLVYLQAIVKETLRLYPAGPLGIPHESIEDCTINDYHIPAGTRLMVNIQKLQRDPQVWEDPSEFRPERFLTSHRDFNFRGQTPEFIPFGNGRRMCPGISFALQIMHLTLANLLHEFEIDRPSKELLNMEESAGMTSIRKDPLEVVLRPRLRL 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12325303 12327266 + CmaCh01G018810.1 Cma01g01881 287574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01881 520 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 Pfam Cytochrome P450 44 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PANTHER CYTOCHROME P450 82C3-RELATED 40 519 - -
Cma01g01881 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Cma01g01881 520 Gene3D Cytochrome P450 28 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma01g01881 520 PANTHER CYTOCHROME P450 40 519 - -
Cma01g01881 520 SUPERFAMILY Cytochrome P450 43 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01881 Cma09g00189 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01879 Cma-Chr1:12314351 Cma01g01881 Cma-Chr1:12325303 0 dispersed
Cma01g01881 Cma-Chr1:12325303 Cma09g00189 Cma-Chr9:786089 0 dispersed
Cma09g00192 Cma-Chr9:799666 Cma01g01881 Cma-Chr1:12325303 1.10E-143 dispersed
Cma09g00193 Cma-Chr9:807064 Cma01g01881 Cma-Chr1:12325303 2.04E-163 dispersed
Cma01g01880 Cma-Chr1:12321737 Cma01g01881 Cma-Chr1:12325303 0 tandem
Cma01g01881 Cma-Chr1:12325303 Cma01g01882 Cma-Chr1:12328508 1.03E-72 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01881 - - csv:101208335 768.074