Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01883 ATGGAGTCGCAATCCGTCTGTCGTAGGGCTTCCCTCGACATTGGTCGGATTACGGGATGGTCGTGCTCGCTTTCATCAACTGATTTGCTCTTCATTTCTTCTCAACCAATTAGGAAACCGAGTTCGACAGAGGAGGCAAGGAGTACAGCTTTAATTTTCGCCGAAATGTATAGGAAGAGAGGGGCGTTGATGTGCGTGGCTGATTCTAACAGGAAGGCTAAATTAGAATCATCTAGAGGGAAAATCATATTGAATGGAGTGGAGGCATTTCGTGGGAAATCTGGCTCAATCTCATTTCATGGTTTAACTCACCTGTTGGTAGAAGATGGTAAGTTAATGTTAGCTTCTTTTGGTGAAAACAAGGGATCTCTCCTCTGGGTACTGGCTCCTGCGGCGTTTATATCATCTTTGATTCTTTCTCAAGTTTTTCTTGGTGGTCTGATTGAGGGTTTCTTCAAGAATGAGATTCTCGTAGAAGAAGTTGTGGCTTCATTGGTGTTTGAAGTCCTATTTTACGTTGGAGTTGTCATGTTCCTTCTCGTTACCAGCGGTGTTTATAGAGTTTACTACTTGACAAAAGCTGCGCGTTTTATAGAGAGGCTGATGTTCCGAATGAGAGGGCTTCCCACCACTCCAGACTTGTTGGAAAAAAGTGGAGCCCTTTTTGCTATGATGATAACCTTTAAGTCCTACTATTTATACGCACTTGATACCCACAAATTAGGTTTTGAAGAGGAGAATTTGGGTGGAGAGGCCCAAATTCACATGCAATGTGGAGGTTTTTGGTTCTCTGTGATGATGAACAATGATGACGAGTCCGATTCTAATCCATTCACCCGTGACGACAAAACGAGGCATTTGTCTGAGAGTAATCAAACCTCCATTCTTGTCTTTCATCAAATGATGAGCAAACAAAATCCTTCTGTTTGGAGTTATTTTTCGTACCAAGTTATTTTAAATCATAAGTGGAGTGGCGGAGTTCGAATATTTAACCATTCAGTCGTGCAG 1008 42.26 MESQSVCRRASLDIGRITGWSCSLSSTDLLFISSQPIRKPSSTEEARSTALIFAEMYRKRGALMCVADSNRKAKLESSRGKIILNGVEAFRGKSGSISFHGLTHLLVEDGKLMLASFGENKGSLLWVLAPAAFISSLILSQVFLGGLIEGFFKNEILVEEVVASLVFEVLFYVGVVMFLLVTSGVYRVYYLTKAARFIERLMFRMRGLPTTPDLLEKSGALFAMMITFKSYYLYALDTHKLGFEEENLGGEAQIHMQCGGFWFSVMMNNDDESDSNPFTRDDKTRHLSESNQTSILVFHQMMSKQNPSVWSYFSYQVILNHKWSGGVRIFNHSVVQ 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12332026 12338723 + CmaCh01G018830.1 Cma01g01883 287576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01883 336 PANTHER OS01G0704200 PROTEIN 39 184 - -
Cma01g01883 336 PANTHER OS01G0704200 PROTEIN 185 229 - -
Cma01g01883 336 PANTHER PROTEIN, PUTATIVE-RELATED 39 184 - -
Cma01g01883 336 PANTHER PROTEIN, PUTATIVE-RELATED 185 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01883 - - - cmax:111473667 177.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01883 Cma09g00179 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01883 Cma-Chr1:12332026 Cma10g00120 Cma-Chr10:516779 1.18E-06 dispersed
Cma01g01883 Cma-Chr1:12332026 Cma09g00179 Cma-Chr9:758574 1.01E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g864 Blo01g01545 . . . . . . . . . Cma01g01883 Cma09g00179 . . . Cpe06g00129 . . . . . . . . . . . . . . . Cone4ag1881 Cone7ag1790 . . Lsi04g01632 Csa03g04175 Chy04g00543 . . . . . . . . . . . Cmo09g00175 . . . Car09g00160 . . . . . . . . . Cla05g01969 Cam05g2120 Cec05g2131 Cco05g2183 Clacu05g2108 Cmu05g1984 Cre05g2103 . . . Cme04g00633
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010511 1 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01883 Cma_Chr01 FPKM 4.454805 6.48363 3.13458 2.711237 4.520598 3.977576 4.744895 5.517613 4.854789 5.743428