Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01887 ATGCGCTCCGCCCTCCTCCTCCTCGCCGTCTGCGCCGCCTCCCATGCCGCAACATTCAGAGAAGCCCCCCAATTTTTCAATTCCCCGGACTGCCCTTCCCAGGCCGATGATCTGGAGAAACACAATGAGGACGGACAACACCATTGCTTCAATCATGCCGTCCATGTGGCGATGACGTTGGACACCGCTTACATACGTGGCTCCATGGCCGCCGTCCTTTCCGTCCTTCAACACTCCTCCTGTCCTCAAAGCGTAATTTTCCACTTCGTCTATTCCGCATCCGCCAACGCGTCATCTCTTCACGCCACCGTCTCCCATTCATTCCCTTACCTCAAATTCCAACTCTACCCTTTCGACGACGAAGCGGCCTCGCGATTGATTTCCATGTCAATCCGATCCGCGTTGGACTGTCCGTTGAACTACGCGCGTAGCTACTTAGCCAACCTCCTTCCCACTTGCGTTGCTCGAGTCGCGTGTTACTTCAACACGGGTGTTATGGTGATCGATCTGGACCGGTGGAGGGCCGGGGACTACACGACCAAGATTGAGGAATGGATGGAATTGCATAAGAGAATGAGAATCTACGAATTGGGGTCGTTGCCTCCGTTTTTGTTGGTGTTCGGCGGGAGGATTTCTCCGGTGGATCACAGGTGGAACCAGCACGGGCTCGGTGGCGACAATATCAGAGGACTCTGCAGGGATTTGCACCCGGGTCCGGTCAGTTTGTTGCATTGGAGTGGCAAAGGAAAACCGTGGGCTCGATTGGACGCGAACCGGCCCTGCCCTTTGGACGCCCTTTGGGCTCCCTACGATTTGTTACAGACCCCATTTTCAATCGATTCTTGA 846 55.08 MRSALLLLAVCAASHAATFREAPQFFNSPDCPSQADDLEKHNEDGQHHCFNHAVHVAMTLDTAYIRGSMAAVLSVLQHSSCPQSVIFHFVYSASANASSLHATVSHSFPYLKFQLYPFDDEAASRLISMSIRSALDCPLNYARSYLANLLPTCVARVACYFNTGVMVIDLDRWRAGDYTTKIEEWMELHKRMRIYELGSLPPFLLVFGGRISPVDHRWNQHGLGGDNIRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTPFSIDS 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12360780 12368052 - CmaCh01G018870.1 Cma01g01887 287580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01887 281 SUPERFAMILY Nucleotide-diphospho-sugar transferases 54 272 IPR029044 -
Cma01g01887 281 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 53 156 IPR029044 -
Cma01g01887 281 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 156 281 - -
Cma01g01887 281 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 157 261 IPR029044 -
Cma01g01887 281 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED 9 157 - -
Cma01g01887 281 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 9 157 - -
Cma01g01887 281 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED 156 281 - -
Cma01g01887 281 Pfam Glycosyl transferase family 8 156 254 IPR002495 GO:0016757
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01887 Cma12g00497 CCT
Cma01g01887 Cma05g00219 CCT
Cma01g01887 Cma12g00497 ECH
Cma01g01887 Cma05g00219 ECH
Cma01g01887 Cma09g00176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01887 Cma-Chr1:12360780 Cma07g00751 Cma-Chr7:3335630 9.58E-107 dispersed
Cma01g01887 Cma-Chr1:12360780 Cma12g00497 Cma-Chr12:2578149 1.64E-134 wgd
Cma01g01887 Cma-Chr1:12360780 Cma03g01030 Cma-Chr3:7170241 6.74E-102 wgd
Cma01g01887 Cma-Chr1:12360780 Cma05g00219 Cma-Chr5:926435 3.19E-136 wgd
Cma01g01887 Cma-Chr1:12360780 Cma09g00176 Cma-Chr9:749396 1.89E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01887 K20893 - csv:101211531 405.216