Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01890 ATGTCTGTGGCTACGAAGCTCCAATCGCATGCTGAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCGGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCAAAATGCAAACAGGAGATCTTGAAGAGGACAGTGAAGCAGAATAAGGCGCTTCCGGTGGTTTCTGAATCGGTTGTTCGGGACAATATCTCCGTCGGGAGCTCCTGCTCTTCCGATTCTTTATCAAGCAACTATTCGGCCAAATTGTTGAATCTGAAAGCGAAGCCCAAGCCTGTGAAGACTGTCGCTGCCGGCGGTGACGCTAACGCAACCACAACGTCGCCTGGGCTCTTGGTTGCGGGGAAACGCTGTGATTGGATAACGCCTTATTCTGACCCACTTTACATCGCTTTTCACGACGAAGAATGGGGAGTCCCAGTTCATGACGACAAGAAGCTGTTTGAGTTACTTGTATTATCACAAGCCTTAGCAGAGCTTACTTGGCCCTTGATCCTCAGCAAGAGACACATTTTCAGGAACGTGTTCAATGATTTTGACCCATCTTCCATCGCACAGTTCACAGAAGCTGAGTTTACGACACTAAAAGTAAATGCCACGCAGCTCCTGTCTGATCAAAAGCTTCGTGCAATCGTGGAGAACGCTAACCAAGTACTCAAGATTCAACAGGAATTTGGTTCCTTCAGCAACTATTGTTGGAGCTTTGTTAACAAGAAGCCTATCCGAAACCGATATCGATATGGTCGTCAAGTACCGGTAAAGACACCTAAAGCGGAGTTCATGAGCAAGGATTTGATGAAGAGAGGATTCCGTTGCGTCGGGCCAACTGTGGTTTATTCCTTCTTGCAAGTTAGCGGAATTGTTAACGATCACTTGGTCGACTGCTTCAGGTATCAAGAGTGCGACGCAAGCGTCAAAGATGACATGAAATTAAGAGTAGAAAATCGGAGATCGGAGTTGCTTATTAGAGCTTTGGAGAAGTCTTCCTTGACGACCTGA 996 47.59 MSVATKLQSHAEPVLESRAILGPGGNRDRAPEKPKCKQEILKRTVKQNKALPVVSESVVRDNISVGSSCSSDSLSSNYSAKLLNLKAKPKPVKTVAAGGDANATTTSPGLLVAGKRCDWITPYSDPLYIAFHDEEWGVPVHDDKKLFELLVLSQALAELTWPLILSKRHIFRNVFNDFDPSSIAQFTEAEFTTLKVNATQLLSDQKLRAIVENANQVLKIQQEFGSFSNYCWSFVNKKPIRNRYRYGRQVPVKTPKAEFMSKDLMKRGFRCVGPTVVYSFLQVSGIVNDHLVDCFRYQECDASVKDDMKLRVENRRSELLIRALEKSSLTT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12380238 12383294 - CmaCh01G018900.1 Cma01g01890 287583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01890 331 PANTHER DNA GLYCOSYLASE SUPERFAMILY PROTEIN 1 316 - -
Cma01g01890 331 SUPERFAMILY DNA-glycosylase 115 300 IPR011257 GO:0003824|GO:0006281
Cma01g01890 331 PANTHER OS04G0501200 PROTEIN 1 316 - -
Cma01g01890 331 Pfam Methyladenine glycosylase 124 296 IPR005019 GO:0006284|GO:0008725
Cma01g01890 331 MobiDBLite consensus disorder prediction 1 36 - -
Cma01g01890 331 Gene3D Hypothetical protein; domain 2 114 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01890 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] - csv:101206397 509.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01890 Cma-Chr1:12380238 Cma04g01574 Cma-Chr4:7984352 4.29E-72 dispersed
Cma08g00590 Cma-Chr8:3359025 Cma01g01890 Cma-Chr1:12380238 5.80E-88 transposed
Cma01g01890 Cma-Chr1:12380238 Cma09g00172 Cma-Chr9:730445 3.43E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g899 Blo01g01553 . Bda01g00542 . Bpe02g00401 . . Bma01g02307 . . Cma01g01890 . Car01g01474 . . Cpe06g00122 . . . . . . . . . . . . . . . Cone4ag1893 Cone7ag1805 . . Lsi04g01641 Csa03g04184 Chy04g00533 . . . . . . . . . . Cmo01g01953 Cmo09g00169 . . . Car09g00154 . Cpe02g00142 . . . . . . . . . . . . . . . . . Cme04g00613
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008489 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01890 Cma_Chr01 FPKM 4.908622 5.865164 1.118672 0.604018 26.417337 24.229284 26.179136 1.224994 1.557222 1.152778