Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01891 ATGGAGAAATCGTCGCAGAGGGAGAACATCCTTTTGGGTTATTCGCTTCAGAGATCATTCACCAATCATTCTTCATCGCCGAGAGCTCCGAATCGGGACTCCGACGATGTTGATTTTCACGACGTGTTCGGTGGCCCTCCGAGAAGGCGGTCGTCGGCTCATGAAACGCGGTACAGCTTCTCGGAAACGGCGGGTTCCTTCGCATTGAAAGGCGGCGGCGGCGGCGATAACGCACCGCCGGGACGGAGTAGTTCCTGGTCCTGTTTGAATGAGATACCGGTGTTCGGAGAAGACAGTCCGCACGGGCGAAGATTTTCGAGCAATGATTTTTACGATGATATCTTTAAGGGCGATGAATCCGCGACTCCTCCTCGCCGGCATGAACTTGACATTTTCTCTTCGGTTCCTGGTTCGATGGTCTCAAGTCCTGCTAGGCCACTCCCGCCGCCGGCAGAGCCATTCGGAAGTTCTTCCCTCCCAGCAGAATTAAGCCTACCATCTAGATTGGCTAAAGGGACTGATCTTCCAGCGTTGGGATCGAACAATTCGAGCCCGTTACGAAACAAGGTTGTTGTGTCAAATGGAAGCCATACAAATGCTTCTAGGTTCACTCTGTCTAGATTTTCTTCCAGCACTTCGAGCCATCGTTTCGAGGATCTTAAAAGTGATCACAATTTGTTGGATCGGCCTGGCGTTCTGTCATCTGAATTCCAACCTCTTAGCAGCGGCGAGACGCCATCCTTCAGAAAGTCCGATAACGCGTTGAACAGGAACAGTTCAACGAAGGGAGAAGATAGTGTAGAAGATTCAAATGGTGGTGGTCAGTTTCAATTCCATTTCTCAATTTACAAATGGGCAAGCAAAGGGGTGCCTCTAATGATGCCACTGAGAGGAGGGAACGGATCGAGTTTAAGAGAGAAGACTTTGCTTAGGAGAAGCTCAAGCTCGACGAATAGAGTCGTGAAGGAGATGAATGAAAAGCCTGATCGAAGTTTTGAGGAAAAACTTTCATCTGCACCTTCAGCTAACTTGAGCAGACAAAGTTCTCGTAAGGATGTCGACTCTGATAACATCACTCAGCAAGCAATGCTCGAGAATGTTTCGAGTGAAAAAGCAGAGAAAAAGATGAGTTCGACAACAAATGAAGATCGAAAGCATGTGGCTAAATCTCTAAGTTCCTTCCTTCTCTACAGTGATGGCGAACAAAGTGAAGATGGGATATCGGAAGAGTATCGACAAGGAGACATGACGGCGAAAAGTGACAAGAAATCAGCAAATCTTTCTGAGCTAACTAGTAGCTCAAATAAACCGGACAAACAAACTTCACTGAGAAATTCAAAAGTGAAAAATCCAAGTTTCCTAAGCTCAGACACGGAATCTCGACAAAACATTGACAGAAAGAAAGTTGGTGGAAGAATCTCGGAGTTCGTCAAGATTTTCAACCACGACCCTGCATCGAAATCCCGAGACGTAGGTGATTTGGGAAATGATAGCTCTACAAGGAAGCAGGAAAGTGCTTCAAAAGCTCAAACACAGGCAACTGTCAATAAAATAAGCAAGGAAGAGAAATCCAAGTTGAATCACAATACAGATGCTTTCATCAAGGTAGATGATGTTTCCAAGCAGTCAGTGCATGGTCACTCTATAGCTGCTAGCTACACTAATAGCTCTACTTCTTCGAAAGAGGGTAGTCCAGCACCAAACACTGTTCATGTTCATAATGTCTCCAAGTCTACAGTTCCAGATGTGGAGGAGCTGTTCCAAGAGAATTTCTCAGTAAAAGAGTTACCACAAGACTATGAGGATTTGAGAGAAGCGGATAATGTTCGTGAAGAATTACAAGATATCGATACCAAAATACGACAATGGTCAAACGGGAAGGAAGGGAATATACGTTCGCTACTCTCAACTTTGCAATATGTTCTTTGGCCTAAGAGCGGATGGAAACCTGTTCCTCTCGTCGATATAATCGAAGGAAATGCAGTCAAAAGATCTTATCAGAAAGCTTTGTTATACCTACACCCTGATAAGCTACAACAGAAGGGTGCTTCAGCAGATCAAAAATATATTGCAGCAAAAGTTTTTGAAATATTGCAGGAGGCTTGGGCTCATTTCAATACACTGGGAGGATTATGA 2136 45.08 MEKSSQRENILLGYSLQRSFTNHSSSPRAPNRDSDDVDFHDVFGGPPRRRSSAHETRYSFSETAGSFALKGGGGGDNAPPGRSSSWSCLNEIPVFGEDSPHGRRFSSNDFYDDIFKGDESATPPRRHELDIFSSVPGSMVSSPARPLPPPAEPFGSSSLPAELSLPSRLAKGTDLPALGSNNSSPLRNKVVVSNGSHTNASRFTLSRFSSSTSSHRFEDLKSDHNLLDRPGVLSSEFQPLSSGETPSFRKSDNALNRNSSTKGEDSVEDSNGGGQFQFHFSIYKWASKGVPLMMPLRGGNGSSLREKTLLRRSSSSTNRVVKEMNEKPDRSFEEKLSSAPSANLSRQSSRKDVDSDNITQQAMLENVSSEKAEKKMSSTTNEDRKHVAKSLSSFLLYSDGEQSEDGISEEYRQGDMTAKSDKKSANLSELTSSSNKPDKQTSLRNSKVKNPSFLSSDTESRQNIDRKKVGGRISEFVKIFNHDPASKSRDVGDLGNDSSTRKQESASKAQTQATVNKISKEEKSKLNHNTDAFIKVDDVSKQSVHGHSIAASYTNSSTSSKEGSPAPNTVHVHNVSKSTVPDVEELFQENFSVKELPQDYEDLREADNVREELQDIDTKIRQWSNGKEGNIRSLLSTLQYVLWPKSGWKPVPLVDIIEGNAVKRSYQKALLYLHPDKLQQKGASADQKYIAAKVFEILQEAWAHFNTLGGL 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12384256 12387374 - CmaCh01G018910.1 Cma01g01891 287584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01891 711 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 705 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 498 517 - -
Cma01g01891 711 SUPERFAMILY Chaperone J-domain 609 705 IPR036869 -
Cma01g01891 711 Gene3D DnaJ domain 607 710 IPR036869 -
Cma01g01891 711 MobiDBLite consensus disorder prediction 235 271 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 29 56 - -
Cma01g01891 711 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 705 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 401 467 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 1 88 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 480 523 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 298 387 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 405 419 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 482 497 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 137 160 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 420 459 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 368 387 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 306 321 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 336 367 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 228 271 - -
Cma01g01891 711 MobiDBLite consensus disorder prediction 8 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01891 - - - cmax:111480409 1347.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01891 Cma09g00172 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01891 Cma-Chr1:12384256 Cma07g01273 Cma-Chr7:7101688 2.01E-35 dispersed
Cma13g00514 Cma-Chr13:5446888 Cma01g01891 Cma-Chr1:12384256 1.22E-32 dispersed
Cma18g00489 Cma-Chr18:2780892 Cma01g01891 Cma-Chr1:12384256 2.47E-31 dispersed
Cma01g01891 Cma-Chr1:12384256 Cma09g00172 Cma-Chr9:730445 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01891 Cma_Chr01 FPKM 4.814138 3.946714 4.637568 5.223604 9.708618 9.256036 9.604268 3.739587 3.286475 2.953732