Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01892 ATGCCATCCTATATGTCAAAACTACGAGCACCGGTTCACTTTCTAGGGTGGGAAGGTGGATTTAAAAGTTCACTGGAGTTTCTTTTTGGGCAACAGAAACTCTTGTGTGGCAGTTCGAGCCTGTTGCACTCAGTACCTTATTCCTCACTCACAGAATTGCATGCACTCTTAAGACCTGGCACTATTTCTGGTGCTAGTTCAGAGCTAGTTAATAGTAGGAGGAATATCTCTGTTCTTGGAGCAATTTCTCGCACATTTTCTATTCCTTCTGTGTCAGGCCCTGCGTTACAGACCTGTGGGTATCACATTGATTGTGCCGTTGCTGAATCAAATCAATATTCCACTCGTAGCAAGTTTCAAGACAAACCAATGGCTGCTTGTGGTTCTAGAGCTGGACTTGGTGAATGTTCTCACGAGAATCTAAGTTTTAGGATTGCACGCACCTCTCCTCCAGCGATCAGTCCCAGTATTTGTTTCAACAATAGAAGCGTTGATTGCTGCCGAAAAGCCAGCATGAGTTTGAAAAATCAGGAGCAGCCTAGCAATAATGTGATATATGGATACTTTACATACAATGTTGCAAAAAGGTTTTGCAGCAGTTACCTACATGCTGGGTTGGGAGCAAGGGATCTTCATAGTTCGTCCACTTCTTCCCTAGCTGCTGGTTCTGCCCCCAATTTGTCATTTGATAATTCTGCACGGGAGGAACAACTTGCCAACTCTACCGATTTATCCGCACAAAAGATTCTGAAAGGCAAATCGATGAAACTGGTTTCTGGGTCTTGCTATCTGCCCCACCCTGATAAAGAAGATACTGGTGGAGAGGACGCTCACTTTATTTGTGTGGATGAACAAGCTATAGGGGTGGCTGATGGTGTGGGTGGTTGGGCAGATCTTGGTGTTGATGCTGGACAGTATTCCCGAGAACTCATGTCTAATTCAGTTAATGCAGTTCAAGAGGAGCCCAAGGGCTCAATTGATCCAGCTAGAGTCTTGGAGAAGGCTCACTCGAAAACTAAAGCCAAAGGCTCCTCCACTGCTTGTATCATAGCGCTTACAGAACAATTTAGTGAGGGGCTCCATGCAATCAATTTAGGAGACAGTGGATTTATGGTGGTTAGAGACGGATGCACAATATTCAGATCTCCTGTGCAGCAGCATGATTTTAACTTCACCTTTCAATTGGAGAGTGGAAACAATGGTGATTTACCTAGCTCTGGACAGGTCTTCTCGGTCCCTGTTGCTCCTGGAGACGTCATAATTGCTGGCACTGATGGACTCTTTGATAACTTGTACAACAACGAGATCACCGCAGTGGTGGTTCATGCCATGAGAGCTGGCTTAGGCTCTCAGGTGACTGCCCAGAAGATAGCTGCTCTTGCACGCCAGCGAGCTCAAGATAAAGACCGACAAACACCTTTCTCCACTGCTGCTCAAGATGCTGGGTTTCGGTACTACGGAGGCAAGCTTGACGACATTACCGTCGTCGTGTCATATGTTGCCAGCTCCAACAACAATTCCGACGACCAAAATTTCTGGTGCTTTAAGTCTATACTCTGCTGCTTCACTCACTCCCCAACTGCGCCTGATTTCTCCATGGCCGGCCGTAAAGACAAAGCTCAGTCTGCCCGCGTCTCTCGAATCGTCATCGCCATCGCAATCGGAGTTCTTGTTGGCTGTCTTTTTGCTTTCTTGTATCCTCATGGACTTTTCGCCTCTGATCTGCCTGTCCAAAACCGTCGCCTCGGCAAATCCGAGTTTCTGCGATATGAACCCGAATTGGCATGTATTTTGAGGTTTCAAGTGTTTCGGATTTTTGACTTGTATGTTCATGATTTGGTTTGTGCATTTCTTTTGAATCTATACTTTTTAGACGATGTTCAGTCTTCTTCTCCTTGCGAATCGTCGGAGCGGTTCAAGATGCTTAAAGGCCACGTCGTTTCAATATTAGAGAAGAACTCCCAGTTGGAGAAGCGTATAAAGGATCTAACAGGGGAGCTGAGGATTGTGGAACAAACAAAAGATCATGCTCAGAAGCAATATTTGGCGCTCAGTGAAAATCACAAGGCTGGTCCATTTGGTACTGTCAAAGGTCTTAGAACCAACCCTACCGTAATCCCTGATGAATCTGTAAACCCTCGATTGGCGAAGCTCCTGGAGAAAGTTTCTATCCAGAGGGAGCTGATTGTGACACTTGCGAATTCTAATGTACAACCCATGCTGGAGGTTTGGTTTACGAGTATCCAGAAGGTCGGTATACCGAATTATTTAGTTGTGGCTCTGGATGACCAGACGGAAGAATTCTGCAAATCCCATAATGTGCCTGTCTACACGAGAGATCCAGACAAGAGTGTTGATTTAATCGGAAAGGAAGGAGGCAACCATCAAGTCTCGGCATTGAAGTTTCGGATTTTGAGGGAATTCTTGCAACTTGGATACAGTGTTCTTCTCTCAGACGTCGATATAGTCTACTTACAGAATCCTTTCGATCATCTTTACCGGGATTCAGATGTGGAGTCGATGAGTGATGGTCACAGCAATATGACAGCTTATGGATACAACGATGTATTTGATGAACCTGGCATGGGCTGGGCTAGATATGCACACACTATGAGAATATGGGTTTACAACTCTGGTTTCTTCTACATTAGGCCTACACTGCCTTCGTTTGAGCTTTTGGATCGTGTCGCGACTCGGCTTTCTCAAGAAAAAGCATGGGACCAAGCTGTTTTTAACGAGGAACTCTTTTATCCTTCTCGTCCTGGACGTGATGGACTTCATGCCTCCAAGAGAACCATGGATATGTATCTTTTCATGAACAGTAAGGTACTCTTCAAGACTGTTCGTAAGGACCCGAAACTAAGAAAGTTGAAACCCGTCATTGTTCATATTAATTACCATCCCAACAAGTATCCAAGAATGAAAGCAGTCGTCGAATTCTACGTGAACGGTCAGCAAAATGCTCTGGATTCGTTCCCAGATGGTTCTGAATGA 2994 45.19 MPSYMSKLRAPVHFLGWEGGFKSSLEFLFGQQKLLCGSSSLLHSVPYSSLTELHALLRPGTISGASSELVNSRRNISVLGAISRTFSIPSVSGPALQTCGYHIDCAVAESNQYSTRSKFQDKPMAACGSRAGLGECSHENLSFRIARTSPPAISPSICFNNRSVDCCRKASMSLKNQEQPSNNVIYGYFTYNVAKRFCSSYLHAGLGARDLHSSSTSSLAAGSAPNLSFDNSAREEQLANSTDLSAQKILKGKSMKLVSGSCYLPHPDKEDTGGEDAHFICVDEQAIGVADGVGGWADLGVDAGQYSRELMSNSVNAVQEEPKGSIDPARVLEKAHSKTKAKGSSTACIIALTEQFSEGLHAINLGDSGFMVVRDGCTIFRSPVQQHDFNFTFQLESGNNGDLPSSGQVFSVPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGSQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVASSNNNSDDQNFWCFKSILCCFTHSPTAPDFSMAGRKDKAQSARVSRIVIAIAIGVLVGCLFAFLYPHGLFASDLPVQNRRLGKSEFLRYEPELACILRFQVFRIFDLYVHDLVCAFLLNLYFLDDVQSSSPCESSERFKMLKGHVVSILEKNSQLEKRIKDLTGELRIVEQTKDHAQKQYLALSENHKAGPFGTVKGLRTNPTVIPDESVNPRLAKLLEKVSIQRELIVTLANSNVQPMLEVWFTSIQKVGIPNYLVVALDDQTEEFCKSHNVPVYTRDPDKSVDLIGKEGGNHQVSALKFRILREFLQLGYSVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHSNMTAYGYNDVFDEPGMGWARYAHTMRIWVYNSGFFYIRPTLPSFELLDRVATRLSQEKAWDQAVFNEELFYPSRPGRDGLHASKRTMDMYLFMNSKVLFKTVRKDPKLRKLKPVIVHINYHPNKYPRMKAVVEFYVNGQQNALDSFPDGSE 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12388132 12393844 - CmaCh01G018920.1 Cma01g01892 287585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01892 997 SUPERFAMILY Nucleotide-diphospho-sugar transferases 729 934 IPR029044 -
Cma01g01892 997 SMART PP2C_4 252 498 IPR001932 -
Cma01g01892 997 Coils Coil 646 680 - -
Cma01g01892 997 SMART PP2C_SIG_2 271 500 IPR001932 -
Cma01g01892 997 SUPERFAMILY PP2C-like 262 497 IPR036457 -
Cma01g01892 997 Pfam Stage II sporulation protein E (SpoIIE) 285 499 IPR001932 -
Cma01g01892 997 PANTHER GLYCOSYLTRANSFERASE 626 997 - -
Cma01g01892 997 Pfam Nucleotide-diphospho-sugar transferase 753 970 IPR005069 -
Cma01g01892 997 PANTHER GLYCOSYLTRANSFERASE 537 587 - -
Cma01g01892 997 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 727 983 IPR029044 -
Cma01g01892 997 Gene3D - 269 392 IPR036457 -
Cma01g01892 997 PANTHER ARABINOSYLTRANSFERASE RRA3 537 587 IPR044290 GO:0016757|GO:0080147
Cma01g01892 997 PANTHER ARABINOSYLTRANSFERASE RRA3 626 997 IPR044290 GO:0016757|GO:0080147
Cma01g01892 997 ProSiteProfiles PPM-type phosphatase domain profile. 261 500 IPR001932 -
Cma01g01892 997 Gene3D - 403 511 IPR036457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01892 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] K20783 csv:101205693 867.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01892 Cma09g00171 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00702 Cma-Chr1:3674552 Cma01g01892 Cma-Chr1:12388132 1.71E-43 dispersed
Cma01g01892 Cma-Chr1:12388132 Cma09g00172 Cma-Chr9:730445 0 dispersed
Cma19g00651 Cma-Chr19:6871014 Cma01g01892 Cma-Chr1:12388132 0 transposed
Cma01g01892 Cma-Chr1:12388132 Cma09g00171 Cma-Chr9:725867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01892 Cma_Chr01 FPKM 39.75885 40.895435 29.825424 27.845425 21.073603 21.986197 22.18926 31.551916 29.610022 30.96179