Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01894 ATGGTTGATTTGGAAACTTCTTCCCCGGTTGAGGTTTCCAGAGAAGCTGGTTTATCTTCTTCAGGTTATATTGAACCAGTGGCGGTGGTGGCTCCGCCAAAGAAGAAACGGAACCTGCCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTTTGTCGCCGGGGAGTTTACTGGCGACGAACCGGTTCATATGCGAGATCTGCAACAAAGGTTTCCAGCGGGACCAAAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGACAGCGGACTAGCAATGAGGTTCGTAAGCGCGTCTATGTTTGCCCGGAACCTTCCTGCGTCCACCATAACCCGGCGAGAGCGCTTGGCGATCTCACTGGAATAAAGAAGCATTTCTGTAGAAAGCACGGCGAGAAGAAATGGAAGTGCGAGAGATGTTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCACATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGCGGCACTTTATTTTCAAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTATTGGCGGAGGAAAGTGCTCGTGCTCAAACCCTAGCAGTTCCAAACTCTGAAGGAAAGGAATCCACCACTTCAAAAGCCGCCGTGACTTCGCCTCCTCCGCCGCCGCTAACACCGTCGACCACGGTGATTTCTCCGGCGTTATCAATTCACAGCTCAGAGCTAGCTGATAATCCGATAAGACTTCCATCTGTTTCAACGCCTGCAGCGACGACATGCTTGACCTCCGCGTCTGTCAATAGTACCACAAATGCAAGCGCTAACGGCAGTAGCTCAAACAATGTGTTTGGAAATTGTACTGTTTTTGCCCCTTCTGCGTCAATTTCAGGGACGACCCAGATATCCCCAACATTACCACCACCCAGTTTACCCGCGTCAATAGTACCCTACGATTGCGCCTCTACTCGCCCTTCTGCTTCCGCAGTTAATCCCACGTCGCTCTCTCTCTCCACATCTCTCTATCTTTCCTCTAAAGGATCCTCCCTCTTTGCCCCACCTGACCAAGATCGTCTGCAGTACACGTGGTCCACTCAACCGGCAGCCATGTCTGCCACCGCCCTGCTGCAGAAGGCAGCAGAAATGGGGGCAACAGCGTCTAATCCGTCGTTGTTCCGTGGCTTTGGGATGGCCACTTCTTCGACTGGTCAAGATACCTCTGCCACTATTCAATGGAGTAGGAATTTGAACCGAGATCACCGGAATGGCTCTTCGTTAACGGCCGGTGTAGGGCTTGATCTCCCATCCGGACCAGACGGTTCTGGTTTGATGATATCTGGAGGCCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGAGATCTTCTTGGTCTTGGCTTAGGCGGAGGTGGGGCCTCTTCAAGTAGATTCTCGGCTTTGATTGCTTCCATGGGTGGTGGGTCTGGTTACCCCGTTGCAGCTTCAGACGCCTGCGGCGGAAGTGGCAATGGAAGCCCCTCCGGCGACGCTTGGGATCAAGGTGAGAAGCATTGA 1554 52.77 MVDLETSSPVEVSREAGLSSSGYIEPVAVVAPPKKKRNLPGMPDPAAEVIALSPGSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLAVPNSEGKESTTSKAAVTSPPPPPLTPSTTVISPALSIHSSELADNPIRLPSVSTPAATTCLTSASVNSTTNASANGSSSNNVFGNCTVFAPSASISGTTQISPTLPPPSLPASIVPYDCASTRPSASAVNPTSLSLSTSLYLSSKGSSLFAPPDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSTGQDTSATIQWSRNLNRDHRNGSSLTAGVGLDLPSGPDGSGLMISGGPFCSFGSQPMTRDLLGLGLGGGGASSSRFSALIASMGGGSGYPVAASDACGGSGNGSPSGDAWDQGEKH 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12396752 12399146 - CmaCh01G018940.1 Cma01g01894 287587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01894 517 SMART c2h2final6 63 85 IPR013087 -
Cma01g01894 517 SMART c2h2final6 139 159 IPR013087 -
Cma01g01894 517 SMART c2h2final6 104 134 IPR013087 -
Cma01g01894 517 MobiDBLite consensus disorder prediction 198 216 - -
Cma01g01894 517 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cma01g01894 517 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 24 506 - -
Cma01g01894 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 506 - -
Cma01g01894 517 MobiDBLite consensus disorder prediction 493 517 - -
Cma01g01894 517 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Cma01g01894 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cma01g01894 517 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Cma01g01894 517 Gene3D Classic Zinc Finger 61 160 - -
Cma01g01894 517 MobiDBLite consensus disorder prediction 198 226 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01894 Cma12g00483 CCT
Cma01g01894 Cma12g00483 ECH
Cma01g01894 Cma09g00169 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01894 Cma-Chr1:12396752 Cma03g00765 Cma-Chr3:5980960 9.47E-140 dispersed
Cma11g01133 Cma-Chr11:6455312 Cma01g01894 Cma-Chr1:12396752 4.96E-103 dispersed
Cma01g01894 Cma-Chr1:12396752 Cma12g00483 Cma-Chr12:2520186 1.63E-147 wgd
Cma01g01894 Cma-Chr1:12396752 Cma03g00762 Cma-Chr3:5974951 8.01E-140 wgd
Cma01g01894 Cma-Chr1:12396752 Cma07g00499 Cma-Chr7:2152878 1.56E-138 wgd
Cma01g01894 Cma-Chr1:12396752 Cma09g00169 Cma-Chr9:719687 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34377 PF12171 zf-C2H2_jaz 7.60E-05 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01894 K25869 - zju:107420256 555.829