Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01897 ATGGATAGCGACGACGATTTCCAGTTACTTTCGTCTCCCGAGCTCGATTCCCCTCTGGTTTCCGGGAGGAAGTTGAAGCGGTTGAAGAAGGGAAGTGCTGCTGTCTCCGAGGATTTTCCGAGGGTTGATGATCGATTTTCGAGTGGGGAGATGGGGGAATTTTCGAGGATCGATGATCGGTTCGATGAAATGCGTGAATTGAGTGCGACGGAATTTGAAGCGGATGATTCTGATAAATTGAACGGCCAAGATCTGGATGACTCCGATGAGCTTCATCAATCGGGATCTGGATCGAGGGATTTGGATGAAGGTGGTGATTTGGAACGTACTCTTGGTTTGGTTGGTGAGGAAAATGATTCTGGAGTGGAGAAGGCCTTGGAATTTTATGCTGTGGCAGGAGTTGATGAAAAAGCTGAAGATCAAAGTCTGGGCGCAGGACTGGAAAGTGGCGAAGTGATTATAGATGAACTGGAGAAGAAACGGCCTAGTTTGGAGGCGTTCGAAGACGAGAGAGAAGCAAAGAGGAGGAAATCTAAGACCAAACGGCTCAAGAGCAGTGGGGAGCCTGCAGATTTCAACGAGACTGCGGTCTCCAAAAGAACTCTTGAGAAGGAGAGAAGAGAATACGTTGAGCAACTCCGCGCCGAGTCTCAGAGACTCTTGCGAGATACTAGAGGAGCAGCATTCAAGCCCATGCCACTTGTTCGGAAGCCAATATCTTCAGTTTTGGAAAAGATCCGGCTAAGGAAGCTTGAACTCTCTAGGAAATCCACCATTATCGAGAACGCCATTTTTGAGGACGACGATGACGATGGATTCACAGAGGTCGTCATCAAGCATAGGTTATCTGTAGAAGGGAGATCAGATTCTGTAGGCAAAGAATGCGAGGATGTGGAGGACCAAAAAAATACATTGTGTAGAGATGAACGAAGTAATTGGAGAAACATGCCCTCAGACAGGGAAAGGGCTACTGATGCGATTTCAGAAGCATTTCGGCCTCCTGTTAATGACACTCAGGAACTCTTTTCTGATTCCCACACAAGCAATGGAGATGATATATCAGACGAGATGTCCAAAAATCCTCTGCAAGAAAATTTTACGCCGTCTGTATTGGCTATGAATTTAAAGCTTGAATCTGCACCTCTGGATGATGTGTTGGACGAGACATCCAGTAGTAGTCTGCAAGAAAATTTCACGCCATCCGTCTTGGCAATGAATTTGAGGCTTGATTCTGCAGCCATTGATGATGAATCTGATGAAGAAGATAATGACAAGGAGAATGTTAATCCACGTCCACATGATTCGTCAAATTTGCCCTCATTGGTGAGCGGGGATCCTGTTAAGGCTTTTGTTGACGATGAAGCTGAGGAAGAAGATGACAGTGACCATGATATGCGCTTCCAAGATGAGGAGGAAGACGAGGACTCGGATTCAGAAGAGCTTAAAGATATGATAGCAACTGCGTATGAAGAAAATCCATTAGACAATGAAAGACGTAACGAACTCCATCAGAAGTGGGTTGAACAGCAAGATGCTGCTGGAACAGAAGATCTTTTGCAGAAGTTGAAATGTGGCTCAAACTTTAGCAAACCAGTTTTGCTGGAAGATGAAAATAATGAGGGAGAAAATGATGAATTTGAATTTTGTGAAACAGCTGAAGAAGATTTACTTCCAATGAATGTGGCTCGAATGAACATTAGAAAAGTAAAGCAAATGCTTCCTCAAATGTATACAGATGAGGATGATCAGTACATGTCTGATGACGAGGAAACAGAGAGGAGGCTAGCAAGAGAACTCATATTTGATAAAGCTGATGGAAAATCCACATTCCTGTCACCTGCTGAGGATAGGAGCACCAAACAAGTCTTTGGCCTTATCAAAAAGCTGAATGTTGTGCCTGATGTCAAGAAGAGACCCAAAGCTCAATCGTTTTTGGATCCTCCTATACTGTCCGGTTTGGGCAAGAACACATCTTCTTCAAAGTCATCTTTCTTAGGCCGAAGTTCAAATTCATCCCTTTCTTCATCCCACAAGCATGGATCATCAACCAACGGTCGTTCTTTTATTTTTGGTCGGGACAATAGCAATAGCAGGAGTGCAATTCCAACAATGGAGGAATCTTCCGAGGAGGGTCAGTGTGAGAATAAACCAAAAAGAGTTTCTTCAGCCAAGTTTAGTTACTCTCAAGTGAGACCGAGTGCACAGAACACGGCGCCTGAAACTAAATCGGGCAGTTCATTGTTTGATATATTAAGGCAATCTTCTTTGCAACTGCAACGCAAACCGTGCACTTTCGGTGAGGAGTCTAGCCAAATGAGCTCTGCATTTGCGTCATTCAAATTGGAGAAGACGCACATGAAGAAGCTAATAAAGACTGAAGGCAGATTCTAA 2391 44.25 MDSDDDFQLLSSPELDSPLVSGRKLKRLKKGSAAVSEDFPRVDDRFSSGEMGEFSRIDDRFDEMRELSATEFEADDSDKLNGQDLDDSDELHQSGSGSRDLDEGGDLERTLGLVGEENDSGVEKALEFYAVAGVDEKAEDQSLGAGLESGEVIIDELEKKRPSLEAFEDEREAKRRKSKTKRLKSSGEPADFNETAVSKRTLEKERREYVEQLRAESQRLLRDTRGAAFKPMPLVRKPISSVLEKIRLRKLELSRKSTIIENAIFEDDDDDGFTEVVIKHRLSVEGRSDSVGKECEDVEDQKNTLCRDERSNWRNMPSDRERATDAISEAFRPPVNDTQELFSDSHTSNGDDISDEMSKNPLQENFTPSVLAMNLKLESAPLDDVLDETSSSSLQENFTPSVLAMNLRLDSAAIDDESDEEDNDKENVNPRPHDSSNLPSLVSGDPVKAFVDDEAEEEDDSDHDMRFQDEEEDEDSDSEELKDMIATAYEENPLDNERRNELHQKWVEQQDAAGTEDLLQKLKCGSNFSKPVLLEDENNEGENDEFEFCETAEEDLLPMNVARMNIRKVKQMLPQMYTDEDDQYMSDDEETERRLARELIFDKADGKSTFLSPAEDRSTKQVFGLIKKLNVVPDVKKRPKAQSFLDPPILSGLGKNTSSSKSSFLGRSSNSSLSSSHKHGSSTNGRSFIFGRDNSNSRSAIPTMEESSEEGQCENKPKRVSSAKFSYSQVRPSAQNTAPETKSGSSLFDILRQSSLQLQRKPCTFGEESSQMSSAFASFKLEKTHMKKLIKTEGRF 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12411970 12415855 - CmaCh01G018970.1 Cma01g01897 287590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01897 796 MobiDBLite consensus disorder prediction 451 480 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 312 362 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 1 116 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 338 362 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 719 745 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 652 708 - -
Cma01g01897 796 Coils Coil 199 219 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 312 327 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 164 198 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 642 745 - -
Cma01g01897 796 PANTHER DNA LIGASE-LIKE PROTEIN 1 388 - -
Cma01g01897 796 PANTHER DNA LIGASE-LIKE PROTEIN 383 788 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 415 480 - -
Cma01g01897 796 MobiDBLite consensus disorder prediction 30 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01897 - - - csv:101210293 1150.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01897 Cma09g00165 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01897 Cma-Chr1:12411970 Cma09g00165 Cma-Chr9:697688 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g923 . . . . . . . Bma01g02312 . . Cma01g01897 Cma09g00165 Car01g01480 . . Cpe06g00118 . . . . . . . . . . . . . . . . . . . Lsi04g01650 Csa03g04195 Chy04g00524 . . . . . . . . . . Cmo01g01962 Cmo09g00162 . . . Car09g00145 . Cpe02g00137 . . . . . . . Cla05g01953 Cam05g2099 Cec05g2108 Cco05g2165 Clacu05g2091 Cmu05g1967 Cre05g2085 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008724 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01897 Cma_Chr01 FPKM 7.908324 7.372973 3.17805 2.746415 15.285322 14.47502 16.982981 1.780928 2.189743 2.359812