Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01898 ATGAAATGGTTTTGGTTTGAATGGGGGAAGGGGGGAGCGGGATGGCCCTGTCCTCCCCTGCGGCGAGGGGTGGGGGGTGGAGCTTTGCTAAGGTCAAAGCCGAAGCAACAGCTTTCTCTGGACAGGGTTAGACCTCGCTTATCTCCGCCGCTAACGATGAAGGCAACCCTGAAGACTAAGTACGACGTAGACAAAAGCGGCGCCGTCTCGACTTTGGCCATTAACGCCGGCGATGTCAAGCTCCGTGCTTCTATCACCGACGCTACAATCATCAACGGCCCTAGTTTAAATGGCCTTGCTCTTGGCGTCGAGAAGCCTGGCTTCTTCATGGTCGACTACAATGTTCCCAAAAAGGATTTGCGCTTTCAGTTTATGAATACTGTAAAGGTAGTAGAGAAGCCTTTGAATTTGACTTACATCCATAGTTGGGGCGACAGCAGAACAGTTCTGGACGGGACCTTAGTCTTTGATTCAGCTAACAAGGTCTCTGCTAATCACGCTCTTGGCTCTGGAAATTGTAAATTGAAGTACAGCTACGTGCACGAGGGGGTGACCACTTTTGAACCTTCGTATGATGTTGCAAAGAATTCGTGGGACTTCTCTGTATCAAGGAAGGTTTATGGCGACGATGTACTCAAGGGTACGTACCAGACTACAACCAAGGCACTGGGACTAGAATGGACAAGGAATTTGAAGTCAAGCGGAAATTTCAAGATTGTAGCATCAGTCAATCTGGGAGATGAACCAAAAAGGCCAAAAGTAACAGCAGAGTCCACATGGAACTTTGAGGTGTAA 795 48.68 MKWFWFEWGKGGAGWPCPPLRRGVGGGALLRSKPKQQLSLDRVRPRLSPPLTMKATLKTKYDVDKSGAVSTLAINAGDVKLRASITDATIINGPSLNGLALGVEKPGFFMVDYNVPKKDLRFQFMNTVKVVEKPLNLTYIHSWGDSRTVLDGTLVFDSANKVSANHALGSGNCKLKYSYVHEGVTTFEPSYDVAKNSWDFSVSRKVYGDDVLKGTYQTTTKALGLEWTRNLKSSGNFKIVASVNLGDEPKRPKVTAESTWNFEV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12416606 12420384 - CmaCh01G018980.1 Cma01g01898 287591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01898 264 PANTHER OUTER ENVELOPE PORE PROTEIN 24A, CHLOROPLASTIC-RELATED 53 264 IPR034626 GO:0022843|GO:0034765
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01898 - - - bhj:120089832 419.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01898 Cma09g00164 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01898 Cma-Chr1:12416606 Cma09g00164 Cma-Chr9:693076 6.50E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g924 . . . . . . . . . . Cma01g01898 Cma09g00164 Car01g01481 . . Cpe06g00117 . . . . . . . . . . . . . . . Cone4ag1901 Cone7ag1814 . . Lsi04g01652 Csa03g04196 Chy04g00523 . . Blo18g00817 Bda08g01291 Bda01g01491 Bpe02g01687 . Bma01g00765 . . . Cmo09g00161 . . . Car09g00144 . Cpe02g00136 . . . . . . . . . . . . . . . . . Cme04g00587
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011859 2 1 2 1 1 0 2 1 0 1 0 0 2 1 1 1 0 2 2 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01898 Cma_Chr01 FPKM 20.117954 20.920179 16.572184 15.618701 25.925024 28.208883 26.388044 28.575251 28.289696 26.849606