Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01901 ATGGGTACAAGAGAGAGGGAAAGAGATCTAGAGCTATTGATCCCAGTGGCTACAGTTTCTGAAAATGGAGCCTCCAAATCCTCCTCCGTACCCACCGCCGCTTTATCTCATCATCACTCCGGCCGTGAGGCATTTGCTAAAGTCATTCGAAGCTGGGCGTCAAAGAAGTTCATGACAGGATGTGTAATTCTTCTACCAATCGCTATTACATTTTATATCACGTGGGGATTCATTCGTTTTGTTGATGGTTTCTTCTCTCCCATATATCATCATTTGGGGATCAATATTTTTGGGCTTGGGTTTATTACCTCCATCACATTCATCTTCCTCGTTGGTATTTTCATGTCATCTTGGTTGGGAGCTTCTGTTCTTACTCTTGGTGAATGGTTTATTAAGAAGATGCCATTTGTAAGCTATATTTACACGGCCTCAAAGCAAATTAGTATTGCAATATCACCAGATCAAACTTCAAATGCCTTCAAGGAAGTAGCAATCATCAGGCACCCTCGTTCAGGAGAATATGCTTTTGGATTCATCACTTCCTCCGTTATTCTTCAGAGCAGAATGGAAGAGGAAGAACTCTATTGTGTTTATGTGCCCACCAATCATCTCTATCTTGGAGACGTAGTTCTTATGAGTTCCAAGGACATCCTGAGGCCTAATCTGTCTGTCCGAGAAGGAATTGAATGTTGA 693 41.99 MGTRERERDLELLIPVATVSENGASKSSSVPTAALSHHHSGREAFAKVIRSWASKKFMTGCVILLPIAITFYITWGFIRFVDGFFSPIYHHLGINIFGLGFITSITFIFLVGIFMSSWLGASVLTLGEWFIKKMPFVSYIYTASKQISIAISPDQTSNAFKEVAIIRHPRSGEYAFGFITSSVILQSRMEEEELYCVYVPTNHLYLGDVVLMSSKDILRPNLSVREGIEC 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12426280 12428026 - CmaCh01G019010.1 Cma01g01901 287594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01901 230 PANTHER PROTEIN LIKE COV 1-LIKE 1 229 - -
Cma01g01901 230 PANTHER COV-LIKE PROTEIN 1 1 229 IPR007462 -
Cma01g01901 230 Pfam Protein of unknown function (DUF502) 103 203 IPR007462 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01901 - - - csv:101209794 432.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01901 Cma09g00162 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01901 Cma-Chr1:12426280 Cma10g00628 Cma-Chr10:2882608 4.35E-122 dispersed
Cma01g01901 Cma-Chr1:12426280 Cma09g00162 Cma-Chr9:688110 6.28E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g933 . . . . . . . . . . Cma01g01901 Cma09g00162 Car01g01483 . . Cpe06g00116 . . . . . . . . . . . . . . . Cone4ag1906 Cone7ag1821 . . Lsi04g01653 Csa03g04198 Chy04g00520 . . . . . . . . . . Cmo01g01964 Cmo09g00160 . . . Car09g00143 . Cpe02g00134 . . . . . . . Cla05g01951 Cam05g2097 Cec05g2106 Cco05g2162 Clacu05g2089 Cmu05g1965 Cre05g2083 . . . Cme04g00583
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000845 2 4 2 1 2 2 6 2 3 3 2 3 5 3 3 6 2 3 5 3 3 2 3 2 3 2 3 3 4 2 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01901 Cma_Chr01 FPKM 0.0 0.0 0.715647 0.0 0.0 0.0 0.0 3.273304 2.881296 2.400484