Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01904 ATGGCTAAGAGATCAGATTTTGCTCAGAAGCTCTTAGATGATCTCAGGTTAAGGAAGCAGCGAATGGCCGCTGCGTCGCACTCCTTCGACCGTTCCAAAACCACAACCATCGATGCATATGCTTACTCGAAACAAATTCATAGAGGATCGAAGAATGCTAGAACACACGGAATGAGTGTTCCCAGTAATACAAGGTATGGTGGAGGGAATAAATCACCAATGACCAATGATACTTCAAATCAGATTGTTCCTTTCACTAGAGGCCGAAACACAGAACAAATAGGAGACTTATCCATGGCCTTAGCTTTTGCACTTGAAAATGGAGGAAAACTAAGAGGAAATACATCATCTGGAAACAATTTAACACTGGGCTTCCTGCAACAAATTGGTAGGAGTTCGTTCGAAATCGGGAAATCAAACAAAAGAGGCGGCCTGGACAGGAACCAAAATGCCAGTGGATATTTTCCAACCATCTCACATCTTCATATTAAGGAGATATCAAAAGGGGCACAGAAATTGAACCAGATCTTGACAACTTGCTCTAATGGAGATTTTGGGAGATGTTCCATAGAAATTGGACAGGAACTGTTGAAGGGAGCTATGAATTTGGAGGAGTCTTTGAGGATGCTTGTGAACTTGCATGAGGCCTCAGAGCACATGATCAGCCCACAACATAAGAATAGGATTGTGCTTTTAGAGAGTGAAGATGATACTGAAGAAAATAAAGATGATATCAAAGGGAATGGTCACGAACAGAAGCTAGCGACCCTGAGATACACAGAAGAGCAACCTCTAAATACTGTGAAATTTAGTTTCCATAGAAGAACAGCAAGCTGTGGTCATGATATCAAAACTTCAAACACACGTGAGAAGGTGGGGATTTCAAATGTAATTGCAAAACTAATGGGGCTAGATAATCTTTCAGACAATTCAAACTATGCACACCAGGACTCAGGTTCCAAGCGAAAGGTCACAGATCTGCAGCCAACAGCCAGGGGTATCGGCCTGGCCGAGTCAAGGACTAATATTAAAGAAAGTCGGTCCGGTTCCAAGATTCCAAGAACAGCCATGTCAGATAAAAATTCAGCTGTGGTGAACACCATATTTGATGCAAGTCTTCAAGCCATCACTTTTCGTGGAAAACCATCATGGAAAGACATGGAAGGAATAAGGCCACAAACTAGCCCATCAACACCAACCATCACAATATTTAGGCAACAACGAAACAAGAATGAGACGAGACAGGGAGTCTCGAGTCAGAAGGACGATCTGGAAGGACTTACAAAGCAGCTTCACGTAAAGCACAGGGAGAAAAAAGGCACAGATAGGGATGACTATAGAGAAGTATTAAAGAATGGAGTGCAGCCGAGGAACAACCGGGACGGTCGTATGAAGCCCCATCACCAAAAGAACAGGGAGCTAAGCACCACAGAAAGGGACCAAAAGAGAGGAGAGCTGAAAAAGGACAGGATGCAGCAGATGAAAAAACAAGAAAGAACACTTCCATTGGAAAAGAGACATCCAGACAACCTTAAACCAAGAATGCAGCAACAGCCGCCAAACAGTCCCAAATACCAGCAGCCACCAATGCTCACAGAGAAGAGAAATCAAAAGAATGGAAAATCAATGGTGCAGGAGAGAAACCAAAAGAGAAATGGGAACACGTTCAAGAGTTTAACAAAACCAGTCCATGACACTTTCACTTTTCCAAAGAAGCAGCAGGATATGAACCATGTCAGGCAAAGTAAGAAAAGCTGCAAAGAAACCATCATAGCTCACCACTCTTACGCCCTTCCTAACAATAGACGTCCTGAACATCCTTGCAGAGAAAACAACAGCTATGATTTAAATAACAAAACAAGTGAGATAACCCACATTAGCGTAGAACAAAGTGAGCCAGTTATGGAAGAGCAACATGCTAAGATACCTGTGAAGAATGATTTCAAATCTACAAAGATTCCTACAAATAATGAAGCAGATGCAAGAGAACAGCGAATTCCAATACTACAGGAGGTAGAACAAAACAATGATGCATTAAATCGACTGGACGTCGTCGGACCACATGGATCTAAAGAAGTGGAAGCTCATACCATTGAATCCAGAGAAACAATAGTATGCCTCCAGCCACTTAATAGTGCACAAGATGCACATGAAGAGACTGAGCGGGTTTTGGCACCGCCCAGCCCTGCTGAAGATGAATGCCATAGCTTGAAAGAGCCACAAATATCAGCTCCAAATGACAGTTGCCAGAAAACAATCTCAATTAGTACTAGCAATCAGCAAGATCAGAGGTCAGTTTTTGGCAGTGGTGTAATCAACGGCTCCCATATTGTGATAAATGCAGTAGAAGAAGCAGAGAAATACGACATTAACAAACTATATCCCCCACATTTGAAGCACCTACATAGTTGTTCCAAGTCAAGAAAACAAGAGACATTGACAGAAAGTGAAAACAAACTTAAGCAGACGCTTATAACGAGTGAATGGTTCCTGAATGCAGCAGAGGCACTTTTCAAACTCAACATCCCCAGCTTCATTCTTCATGACAGTGGTCATAGCCATTTAAAAAATGGAAAAAATGTCATGATAGATTGTAGTTACGAGCTCATGAAGCGAAAGGGCATACGTCAAGAGCTCAGCAATCGTCCTAGTACAAACATTTCTTTGAGGTCCAACAAAATAGGATCTTTAGATGACTTGATCAAGCAGGTGCATAGAGACATTGAGGCGTTGAGATTCTATGGTAAGAATGGTAACTTAAAATGTGAATTGCAAGACTACTTGCCCAAAATGCTTGAAAGTGATATCTATAACCAGGAACCTGACTTAAATAGCATGTGGGACTTGGGATGGAATGAGCCCACATTCGTGTTTCTTGAAAGAGAGGAGGTTGTAAGGGGTGTGGAAAAGTATGTTCTGAGTGGACTGCTCGATGAAGTCACAAGAGACCTTGTACATGTCTATCTTTTGATGAAAGGAAAGGGCAGAGAAATTTGA 2997 42.08 MAKRSDFAQKLLDDLRLRKQRMAAASHSFDRSKTTTIDAYAYSKQIHRGSKNARTHGMSVPSNTRYGGGNKSPMTNDTSNQIVPFTRGRNTEQIGDLSMALAFALENGGKLRGNTSSGNNLTLGFLQQIGRSSFEIGKSNKRGGLDRNQNASGYFPTISHLHIKEISKGAQKLNQILTTCSNGDFGRCSIEIGQELLKGAMNLEESLRMLVNLHEASEHMISPQHKNRIVLLESEDDTEENKDDIKGNGHEQKLATLRYTEEQPLNTVKFSFHRRTASCGHDIKTSNTREKVGISNVIAKLMGLDNLSDNSNYAHQDSGSKRKVTDLQPTARGIGLAESRTNIKESRSGSKIPRTAMSDKNSAVVNTIFDASLQAITFRGKPSWKDMEGIRPQTSPSTPTITIFRQQRNKNETRQGVSSQKDDLEGLTKQLHVKHREKKGTDRDDYREVLKNGVQPRNNRDGRMKPHHQKNRELSTTERDQKRGELKKDRMQQMKKQERTLPLEKRHPDNLKPRMQQQPPNSPKYQQPPMLTEKRNQKNGKSMVQERNQKRNGNTFKSLTKPVHDTFTFPKKQQDMNHVRQSKKSCKETIIAHHSYALPNNRRPEHPCRENNSYDLNNKTSEITHISVEQSEPVMEEQHAKIPVKNDFKSTKIPTNNEADAREQRIPILQEVEQNNDALNRLDVVGPHGSKEVEAHTIESRETIVCLQPLNSAQDAHEETERVLAPPSPAEDECHSLKEPQISAPNDSCQKTISISTSNQQDQRSVFGSGVINGSHIVINAVEEAEKYDINKLYPPHLKHLHSCSKSRKQETLTESENKLKQTLITSEWFLNAAEALFKLNIPSFILHDSGHSHLKNGKNVMIDCSYELMKRKGIRQELSNRPSTNISLRSNKIGSLDDLIKQVHRDIEALRFYGKNGNLKCELQDYLPKMLESDIYNQEPDLNSMWDLGWNEPTFVFLEREEVVRGVEKYVLSGLLDEVTRDLVHVYLLMKGKGREI 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12434812 12438988 - CmaCh01G019040.1 Cma01g01904 287597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01904 998 PANTHER EXPRESSED PROTEIN 1 986 - -
Cma01g01904 998 MobiDBLite consensus disorder prediction 55 79 - -
Cma01g01904 998 MobiDBLite consensus disorder prediction 458 512 - -
Cma01g01904 998 MobiDBLite consensus disorder prediction 406 561 - -
Cma01g01904 998 MobiDBLite consensus disorder prediction 415 451 - -
Cma01g01904 998 MobiDBLite consensus disorder prediction 546 561 - -
Cma01g01904 998 MobiDBLite consensus disorder prediction 47 79 - -
Cma01g01904 998 MobiDBLite consensus disorder prediction 514 538 - -
Cma01g01904 998 PANTHER OS01G0228800 PROTEIN-RELATED 1 986 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01904 - - - cmax:111481284 1986.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01904 Cma-Chr1:12434812 Cma11g00617 Cma-Chr11:2955728 7.67E-07 dispersed
Cma01g01904 Cma-Chr1:12434812 Cma10g00630 Cma-Chr10:2887902 1.90E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g935 Blo01g01560 . Bda01g00533 . Bpe02g00395 . . Bma01g02317 . . Cma01g01904 . Car01g01485 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01655 Csa03g04200 Chy04g00518 . . . . . . . . . . Cmo01g01966 . . . . . . Cpe02g00132 . . . . . . . Cla05g01949 Cam05g2095 . Cco05g2160 Clacu05g2087 Cmu05g1963 Cre05g2081 . . . Cme04g00581
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009852 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01904 Cma_Chr01 FPKM 4.859317 5.827385 1.79254 1.457994 3.864577 3.891136 3.604127 0.0 0.075831 0.059403