Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01905 ATGGTGAGTTCTTGCAAAAGGAGGATGGCTCAGGCCACTGCTAGGCCAGTAGAGGAATTTTTTGTGGTGATTTCTCCTTCTGCTTTGGAAGTCTTCTGCCGGCAAATTAACCTTGTTTTTGCCAGCGAAGACTTCTGTCCGGATCCTTCTACTATAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGGGAACAGTCAAGAACAGATCACATCGAAGGTCAATGAGCTTAAGGCCAAGTTAGGACCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCTAGGAATTGGAATGTAGACAAAGCAAAGAAAATGTTGGAGGAGACATTCAAATGGAGATCTATGTATAAGCCTGATGAAATTCGTTGGCCTGAAATAGCATTTGAAAGTGAGACCGGAAAACTTTATCGAGCAAGTTTTCATGACCGAGAAGGAAGAACTGTCCTCATAATGAAGCCAGGAAAGCAGAACACAACATCATTAGAGAATCAAATTCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCGGAAGGTCAAGAACAGATGTCATGGTTGATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTGCCAATCAAATCTGCACGAGAGACCGTCAACATCTTGCAGAACCACTATCCCGAGCGACTAGCTCTAGCGTTTCTATATAATCCCCCAAGGATATTTGAAGCGTTCTGGAAGGTAGTCAAATACTTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTGTATCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCATCAGAGTTTGGAGGAAAAGCTCAACTGGAATATGTCCATGAGGAGTACTCTAGATTAATGATTCAGGATGATGTTAAATGTGCTGCCTTCTGGGAACCTGGTGAAAAGCAACACCACGTCGTCAATGGCTACACCAGTGCAGCGGTGGCTCCAGAGTGA 1017 42.87 MVSSCKRRMAQATARPVEEFFVVISPSALEVFCRQINLVFASEDFCPDPSTIMFGRWSTSHHEEGNSQEQITSKVNELKAKLGPLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPDEIRWPEIAFESETGKLYRASFHDREGRTVLIMKPGKQNTTSLENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFEAFWKVVKYFLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDVKCAAFWEPGEKQHHVVNGYTSAAVAPE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12442461 12447868 + CmaCh01G019050.1 Cma01g01905 287598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01905 338 SUPERFAMILY CRAL/TRIO N-terminal domain 62 135 IPR036273 -
Cma01g01905 338 SMART sec14_4 139 294 IPR001251 -
Cma01g01905 338 CDD SEC14 151 292 IPR001251 -
Cma01g01905 338 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 58 337 - -
Cma01g01905 338 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 133 297 IPR001251 -
Cma01g01905 338 SUPERFAMILY CRAL/TRIO domain 133 310 IPR036865 -
Cma01g01905 338 Pfam CRAL/TRIO domain 143 291 IPR001251 -
Cma01g01905 338 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Cma01g01905 338 PANTHER GH16843P 58 337 - -
Cma01g01905 338 Pfam CRAL/TRIO, N-terminal domain 73 118 IPR011074 -
Cma01g01905 338 Gene3D - 56 323 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01905 - - - csv:101203752 561.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01905 Cma-Chr1:12442461 Cma16g00660 Cma-Chr16:3439388 9.94E-139 dispersed
Cma11g00086 Cma-Chr11:419660 Cma01g01905 Cma-Chr1:12442461 3.56E-15 dispersed
Cma01g01417 Cma-Chr1:10002706 Cma01g01905 Cma-Chr1:12442461 7.85E-85 transposed
Cma01g01905 Cma-Chr1:12442461 Cma03g00753 Cma-Chr3:5932825 5.39E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01905 Cma_Chr01 FPKM 16.109455 19.976631 15.061818 15.571557 16.009602 15.636868 15.585392 19.417635 19.982977 19.827553