Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01908 ATGGCGGAAGATGTTCGGTGTTGTGAGTCGAAGTTCTTTTTGTTCCTGTTGATAATCGTAGGACTGGTGGCCTTCGCTGGACTCATGGCTGGGCTCACTTTGGGTCTCATGTCTCTTGGCCTTGTTGACCTCGAAGTTCTTATGAAGTCTGGCCGCCCTCAGGATCGCAAACATGCTGCTAAGATATTGCCAGTGGTAAAGAATCAGCATCTTCTACTTTGCACACTTTTGATTGGTAACTCTTTGGCAATGGAGGCTCTTCCGGTATTCTTAGACATGATCGTACCTCCTTGGGTGGCAGTCCTTGTCTCGGTTACTCTTATTCTCATGTTTGGAGAGATATTACCGCAAGCAATTTGCACTCGTTATGGGTTGAAAGTTGGGGCAATAATGGCACCATTCGTTCGCGTTCTTCTCACGGTTTTCTTTCCCATTTCATATCCAATTAGTAAGGTTCTTGATTGGATGTTGGGTAAAGGGCACGCTGTACTCTTGAGGAGAGCAGAGCTCAAGACTTTTGTGAACTTTCATGGCAATGAGGCTGGAAAAGGTGGAGATTTAACTCACGATGAGACTACTATCATTGCTGGGGCACTTGAATTGACAGAAAAGACAGCCAAAGATGCCATGACATCGATATCAAATGCATTTTCCCTTGATCTGGATGCAACTCTTGATTTGGAGACACTCAATGCTATTATGACGAAAGGCCATAGTCGAGTTCCTGTTTATTCTGGAGATCCAAAAAACATAGTTGGACTAGTTCTGGTTAAAAATCTGTTAACTGTTGATCCAGAAGATGGAGTTCCCCTTAGAAAAATGATTATTAGAAAAATTCCACGGGTTTCTGAAGATATGCCTCTATATGACATTTTAAATGAATTTCAAAAGGGCCATAGTCACATTGCTGTGGTATTCAAGAAACATGGCTACCAATCTGAGGCATTGCTGAAAAAAGACAATGGTGTTGACTCAGCTGCTGGTGCTGCTACTCATAATTTTGCGATGAAAATGGAATCAGTTGATGCTCAAACAATAGCTGAAAAGGCCGGGGGCCAACAGACGAAGAAAAGTCCACCAGCTACTCCTGCCTTTAAAAAACGACACAGAGGTTGTTCATTTTGCATTTTAGATGTCGAAAATGCGCCTCTTCCTGTCTTACCTGCTGGTGAAGAGGTGGTTGGTGTCATTACTATGGAGGATGTGATTGAAGAACTTCTTCAGGAGGAGATATTAGACGAGACAGACGAGTATGTCAATATCCACAACAGAATAAAAATCAACATGCAACCATCTCCGGAAAAACCAAGCACCAATCCACCTCAGCTTTCCCCAAATGTTAATACGTGA 1350 42.89 MAEDVRCCESKFFLFLLIIVGLVAFAGLMAGLTLGLMSLGLVDLEVLMKSGRPQDRKHAAKILPVVKNQHLLLCTLLIGNSLAMEALPVFLDMIVPPWVAVLVSVTLILMFGEILPQAICTRYGLKVGAIMAPFVRVLLTVFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTSISNAFSLDLDATLDLETLNAIMTKGHSRVPVYSGDPKNIVGLVLVKNLLTVDPEDGVPLRKMIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVFKKHGYQSEALLKKDNGVDSAAGAATHNFAMKMESVDAQTIAEKAGGQQTKKSPPATPAFKKRHRGCSFCILDVENAPLPVLPAGEEVVGVITMEDVIEELLQEEILDETDEYVNIHNRIKINMQPSPEKPSTNPPQLSPNVNT 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12453841 12458424 - CmaCh01G019080.1 Cma01g01908 287601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01908 449 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Cma01g01908 449 Gene3D - 189 331 IPR046342 -
Cma01g01908 449 Gene3D - 364 414 IPR046342 -
Cma01g01908 449 SUPERFAMILY CBS-domain pair 194 310 IPR046342 -
Cma01g01908 449 MobiDBLite consensus disorder prediction 429 449 - -
Cma01g01908 449 Pfam Cyclin M transmembrane N-terminal domain 17 189 IPR002550 -
Cma01g01908 449 CDD CBS_pair_CorC_HlyC_assoc 205 310 IPR044751 -
Cma01g01908 449 Pfam CBS domain 219 263 IPR000644 -
Cma01g01908 449 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Cma01g01908 449 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 441 - -
Cma01g01908 449 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 441 IPR045095 GO:0010960
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01908 K16302 CNNM; metal transporter CNNM - csv:101202791 775.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01908 Cma-Chr1:12453841 Cma16g00096 Cma-Chr16:430111 1.31E-171 dispersed
Cma01g01908 Cma-Chr1:12453841 Cma19g00517 Cma-Chr19:6055358 1.35E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g942 . Blo12g00909 Bda01g00530 Bda03g00259 Bpe02g00392 Bpe04g00212 Bma04g00208 Bma01g02320 . . Cma01g01908 . Car01g01490 . . . . . . . . . . . . . . . . . . . . Cone17ag1339 . Lsi04g01664 Csa03g04207 Chy04g00511 . . . . . . . . . . Cmo01g01971 . . . . . . Cpe02g00128 . . . . . . . Cla05g01942 Cam05g2085 Cec05g2098 Cco05g2152 Clacu05g2080 Cmu05g1955 Cre05g2075 . . . Cme04g00566
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009053 2 3 1 2 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01908 Cma_Chr01 FPKM 18.069536 21.117119 26.814632 27.556812 22.215841 22.836054 24.125916 53.84063 49.461926 56.315475