Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01916 ATGGCGTCTTTGTGTAGTGAGGCGAATACTGCTATGACGATGCCTATGAGAGGCATAATTAGCGAGCAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGAAAAGTGAGGGAGGGAGTTCAAGTGCGTCATCTCGGGAAGTCGCATATTGTCCCTGAGCAGCCTTCGTCATCTTCTCCGGTTCCGATTGAACAGAGCCGGTGGGCGAATTTGCCGCCCGAGCTTCTATTGGACATAATTCAACGAGTGGAAGCGAGTGAGACCACTTGGCCTTCTCGCCGGCATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTGAGGACTCCCGAACAGTGTGGGTGGATCACCTTCCCAATTTCCCTGATGCAGCCGGGACCAAGAGAAACGCCAATCCAGTGCTTCATTAAAAGAGAAAGGGCAACTTCAACGTTTCGGCTCTATCTCGGCCTAAGCCCTGCTCTGTCTGGTAACTTAAGTAAACTGCTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACTGATTTCATTGTATCATTACTTCCAGACGACTTCTCTCGAGCAAGCAACAATTTCATCGGAAAATTGAGGTCAAATTTTCTGGGGACCAAGTTTTCGATTTATGACAGTCAGCCTCCACATGACCCAAAATTGCGAACTAGTAGATCAAAACGAAGAATTCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACCAACTATAAAGTCGCTGCCGTAAGCTACGAGCTGAATGTCCTCCGCACCAGAGGGCCGAGGAGAATGAGGTGCACAATGCATTCAATACCTGTTGCAGCTGTGGAGGAGGGTGGCACTGCCCCGACTCCAACAGAGTTTAAAGACTGCATCGATGAACATGATTCATCTACGTCGAGTTGCAAAGGAAAGAAGCCGATATGGGAGTCGTCCCCCGAGCCTCATGAATCGACAGCACCGTTGGTATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTGCAGTGTTGGTGCCTGAATTTCAAAGGGCGCGTCACGGTTGCATCTGTGAAGAACTTCCAGCTGGTTGCTGCAGAGACGAGTGAGAATGTGTCTGCAGCTGAACAAGAAAAAGTGATTCTGCAGTTTGGGAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTACCCTCTCTCAGCTTTCCAAGCGTTTGCAATCTGCCTTAGTAGCTTTGATACCAAGCCAGCTTGTGAATGA 1260 48.41 MASLCSEANTAMTMPMRGIISEQSEIREGSGNSSRKVREGVQVRHLGKSHIVPEQPSSSSPVPIEQSRWANLPPELLLDIIQRVEASETTWPSRRHVVACASVCRSWRMITKEVVRTPEQCGWITFPISLMQPGPRETPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLLPDDFSRASNNFIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVSYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCIDEHDSSTSSCKGKKPIWESSPEPHESTAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAETSENVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12484871 12486777 - CmaCh01G019160.1 Cma01g01916 287609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01916 419 MobiDBLite consensus disorder prediction 15 65 - -
Cma01g01916 419 SUPERFAMILY F-box domain 65 124 IPR036047 GO:0005515
Cma01g01916 419 Gene3D Tubby Protein; Chain A 127 419 IPR025659 -
Cma01g01916 419 PANTHER TUBBY-RELATED 14 419 - -
Cma01g01916 419 SUPERFAMILY Tubby C-terminal domain-like 118 419 IPR025659 -
Cma01g01916 419 PANTHER TUBBY-LIKE F-BOX PROTEIN 14 419 - -
Cma01g01916 419 Pfam F-box domain 69 116 IPR001810 GO:0005515
Cma01g01916 419 ProSitePatterns Tub family signature 2. 404 419 IPR018066 -
Cma01g01916 419 MobiDBLite consensus disorder prediction 299 325 - -
Cma01g01916 419 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Cma01g01916 419 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Cma01g01916 419 PRINTS Tubby superfamily signature 201 225 IPR000007 -
Cma01g01916 419 PRINTS Tubby superfamily signature 397 419 IPR000007 -
Cma01g01916 419 PRINTS Tubby superfamily signature 249 276 IPR000007 -
Cma01g01916 419 PRINTS Tubby superfamily signature 376 395 IPR000007 -
Cma01g01916 419 PRINTS Tubby superfamily signature 185 201 IPR000007 -
Cma01g01916 419 Coils Coil 357 377 - -
Cma01g01916 419 MobiDBLite consensus disorder prediction 29 45 - -
Cma01g01916 419 Gene3D - 64 117 - -
Cma01g01916 419 Pfam Tub family 130 414 IPR000007 -
Cma01g01916 419 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01916 Cma09g00148 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01916 Cma-Chr1:12484871 Cma16g00616 Cma-Chr16:3186287 0 dispersed
Cma08g00582 Cma-Chr8:3323496 Cma01g01916 Cma-Chr1:12484871 6.71E-14 transposed
Cma01g01916 Cma-Chr1:12484871 Cma07g00481 Cma-Chr7:2099589 2.32E-179 wgd
Cma01g01916 Cma-Chr1:12484871 Cma09g00148 Cma-Chr9:634904 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34379 PF01167 Tub 8.90E-105 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01916 K19600 - csv:101222500 733.021