Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01918 ATGGAGTATCGAACTTCGTCGACTGTCTACAAGAAATATTCAAATGCTCGCAGTTTCAACGATAGATCGACGTACGATGGCGTTTTTTCTGCTCCGTCGAAGCACGGGGCTCCGGTTTTCTCGGCTCGAGTCGAGGACTACAGAGAGATTTTTGGCGGTTCGCGAGTTTCCTCGATTCCGATTCTTGATGTTCCGGCGGTGAGCGACAAGAAGTTTCCGGTAGATGTTCGTAGCTCGAAGGTTGAATACTCGAAGATTTTTGGCGGTTTCGATGAGTTAAATTTCGCCGTGCCTTATGAGGAACTTCTGGCCGAAGCAAACAAAGCAAATTCGTTTTCTAAGGAAACTCGGACTTCAGCTGGAAGAGGATCCGCAGCAACAGAAAATTCTTCTCAGTATGAAAAGGAGAATAATTTTTCCACGCGTGAAGCATCATCTCTTCCATTTGATAGAATGGAGAAGTTCAGCGTGTCATATCAAAAGATCAACCAAGGAAGCAAAAGTTATGCGACAGAGACAGCTCATGTAGCTCTTCCCCAGGCCATTCCAGGTTTTTCATGTTTAATTGATGAACAATCTCCTGTGCAGATGTGTGTAACTGATATGCCAACATCCGAAAAATTGAAGGATATTCACCCAGAAAAAGTTGGGAATGAAGTGGAAAATAAGCCAGAACTTCCAATTTCTGGTGACAGTGAACAGACGTTTAGATCAAATAATCCTACTAATCGTCAAAACAGAACTGGCTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGATATGAGGTGGATCAAGGGGTACACAAACCTGAAACTCCACTGAAACATAATTTTCTGCCTAAATTTGGTAGAAGTGATGCATTTTCAGGAAAAACAACTGGTTTAAATTCTGAAACTTTTGAACACTCTAAAGATTCTTATGACGTTTCTTCACCTTCATATTTTGGGGAGGAAGTTGAGGTGAATCCAGTTGCTGCTGCCTCAGTTGCAGCTTTGAGAAAAGCAATTGATGCTGCTCAGGAAAGTATAAAAATTGCCAAGGAGTCGATGGAAAGAAAGAAAGCTGCCAAACTTCAAAAGCATAAAAAAACAAGATCTTCTAGGATCCTAAATCCTGAAGAGAGAAAGGAGGTAAGCACACGCCAAGAGAAGGTGGCTGGTAAAACCAATGGAAAAATGGATCCTTCAGAGGAAGAAATTGCTGATAGCAGGGAGGATAAATCACCTGCAGAATGTCCTATCACTCAAAGAGCGGTGAGGGAAAATTTAAATGCCATAGAACCAAATTATGTGGAATTGAAGTCAACAAAAGTTGATTGTAGGGAGGAAGAAGCAAAAGAATTAGATGCAACAGAACAATTTTATGAACCTAGGCATTTTGATGAAGATGAGGCAAAAAGACTGGAACCTCGAAAGGAGGACAATACAAATAGATATGGATGGCAAGGAAACATTGGATCAAAGGAAACATCTGAGAATCCTGGAGAATATGGTGATAACTTGGTAATAGTCGATAAGACTAAGGAGCCTGAGGAAAATGGCATAAACTTAAGTGTAGTCAAAGGCATTCTTATGAGCAAACTAAAATCAGTTCTAGGTGTTATTGGGAAGGAAGAAGATAAAATAACACGTCGCCAAGACCAGCTAGAAGCTGAAATGAAAGCTGAGGCATCCATAGAACATGAAAAGTGTGTGGAATTGCCGGAAGAACTTCAAGTAACAGAAGATCACGAGGAGTTCTCAATCTGGGAGATGGGGGTAAATAAGGACAGGGAGACCCAAGTTAAGGCTCATCAATGGGTAGTGGAGAAAGATAGACCTATCTGCCAACAAGAAGAAAAAGAGGGAGAAACAAATGCCTTCCAAATTGAAAATGATGTTGAAAAGATATTAGATAAATCTAACGAAGAGGAAGGATTTATAAATTGTAACAATGTCTTCCATGATGGCGAAGAAGCTCAAGACATGCTAGAAGATGTTGAATCAAAAGGAAATGAAGAACTTCAAGAAAACAAACGGGATGATGAGATGATTGAAGGGCTTCCTTTTCATTTGCGCAATAATGAGATTGGACATCATGTTCAAAGACAAATAAACATTGGTGAATGTGCAGTACACGAGAACATCGTACAAGCAACGCCAGACAATCTGAATACTGAGAATAAAATTGAACTAGAAGATGGTTTAAGTAAGCAGGATGAATGTGATAACCTCTCAGAAGATCAGGATGCTAATAATTTCATAGCTAGTATGGAAGGGGTAGAAGTGATTACCGACCAGCCTGAATATCGGGATATTGATAATTCAATGGAGTTAGCTAATATTGCCTTGGAAGTTGTGAATAATGAACCTGAGGCAATTACTGAGGAGGGTGACGTGGAGGAGAGATTGCCTTTTAAATTGTTTTCTATGGCAGAGGATGCACTTAAACGTAGAGTCAAAATGGAAAATTCAAATGCAAGCCCCATTTCAATCCAAAGTGGGTTAGATTTTGGTCTAATCGATTTGAAATTAGAGCAAATGCAACATGATGCATCTGTGAACTGGTCCTCAATCTTTTGCAGTTTGGAAAATGCTGAAGGTATGGCTTCTGAACTTAGAGGAATTGAGAGAAATATGGAGAAAATTGAAGTTTCAATTATTGAAGAAAATGATGACGATTCAAATGAAGAAGAGATACCTAGTAATGTAAATAATACTGAAGCAGGTAACCAACCTAGCATAAAGATAGATGACAACAAAATCAGTGAAGAGGTAGTGGAGAAAACCGCAAATACAGGAGCAACTGAGAACCATCAAGCAACCATCGAAGTAGAAGAAAGTGAAACTTTTTATGTTTTGAAAAATGAAATGCAGTTGGAATTTGATGAGAACAATATTAGAACCAGTAGTCAATCTGGCATGATTGACATGGACTCGGAAATAGTTCATGACATCAAAACATGTGAAACTCGAGGAGAAAGTGAGGATAGTTATCGAGTAATTATGACAGAGGATGAAATGGAAGCTAGTGACACGTCTGACAAAGAGCTGGAATACGCAGTTCACTTGGAAACTTCGGAGGAAGCTGATTCGCCTGGAAGTTCAGGAAGAAAAGAAAATTTAGAAAATACAGAACAGGAGATTAGTACTGGCCAGAAGGTAACAGAAAACGAGAATCATCGAACAACCCCAACAATGGGTGAAATAGAAATTAATGCTGACATGCAGAGAGAAGCAGGGATTGAATCCAAATTCGACAATGAGACAGAAGCTCATGGTTTGCCTCAACCTAAAGAGGAGTTGGCTGAGAACTCAACAAATCAAAGTATCTTAGAAAATGGGGAGAATCATCAAGCGCCCCAATTAATGCAGGAGGAGAAGGTCTTCCATGAGAAATTTGAGAAAGATGCTGAAGTGATAAAGGATCGGCTGAGAAAAATTGATGAAGCAAAAGGAAAGGAAAGAGAGAGGGAGAGATTAGCTGTAGAAAGAGCAATTCGTGAGGCTCGTGAAAGAGCATTTGCAGAAGCCCGAGAGAGGGCTGCTGCCGAGAGAGCTTCTGCTGACACTCGTCGAAGAGTAATGGCCGAGCCACGTGAACGCCCAAGGAAGGCTTCCATTGAGGCAAATCCTAAGCCTTCTGCCGAAAAGCATTCAAAGGAAGCCAAATTAAAAGCTCAACGTGCTGCCGTTGAAATGGCTACTGCTGAGGCAAGAGAGCGTGCTTTAGAAAAAGCTATGTCCGAAAAGGCTATTTCCGAGGCGAGAAATCTGGCTGACAAGATTGTTGCCGAAAAACTAAATGGTGCAGCTGGAGTTAGTAAAGTAAAGAAGAGCTTTTCATTTAATGACTCTCAACCAAAAGGCCAATGTTCTTCCAGCAATTTCAGGCATGCGAATTCATTCAACCTTGGAGGTCCCGACGCGTCAGAGAGAGAGGTGGGATCTGCTGGGGAATCTGCACAGAGAAGTAAAGCCAGGTTGGAGAGGCATCAACGAACGGTTGAGCGTGTGGCGAATGCTCTTGCAGAGAAGAATATTCGTGACATTCTCGGACAGAGAGAACAGGAAGAGAGAAATAGACTAGCAGAAGGTCTAGATGCTGAAGTTAAACGGTGGTCAAGTGGGAAGGAGGGAAATCTGCGTGCATTGCTTTCAACTCTACAATATATCCTCGGGCCCGACAGTGGGTGGCAGCCAGTCCCTCTAACAGATATTATCACGACAGCTGCTGTCAAGAAAGCTTACCGTAGGGCAACTCTTTCGGTCCACCCTGACAAATTGCAGCAACGGGGTGCAAGCATTCCACAAAAGTACGTATGCGAGAAGGTTTTTGATCTTTTGAAGGCTGCTTGGAACAAGTTCAACATGGAGGAACGATTATAA 4374 41.4 MEYRTSSTVYKKYSNARSFNDRSTYDGVFSAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPAVSDKKFPVDVRSSKVEYSKIFGGFDELNFAVPYEELLAEANKANSFSKETRTSAGRGSAATENSSQYEKENNFSTREASSLPFDRMEKFSVSYQKINQGSKSYATETAHVALPQAIPGFSCLIDEQSPVQMCVTDMPTSEKLKDIHPEKVGNEVENKPELPISGDSEQTFRSNNPTNRQNRTGWFRSDSADKLFNGYEVDQGVHKPETPLKHNFLPKFGRSDAFSGKTTGLNSETFEHSKDSYDVSSPSYFGEEVEVNPVAAASVAALRKAIDAAQESIKIAKESMERKKAAKLQKHKKTRSSRILNPEERKEVSTRQEKVAGKTNGKMDPSEEEIADSREDKSPAECPITQRAVRENLNAIEPNYVELKSTKVDCREEEAKELDATEQFYEPRHFDEDEAKRLEPRKEDNTNRYGWQGNIGSKETSENPGEYGDNLVIVDKTKEPEENGINLSVVKGILMSKLKSVLGVIGKEEDKITRRQDQLEAEMKAEASIEHEKCVELPEELQVTEDHEEFSIWEMGVNKDRETQVKAHQWVVEKDRPICQQEEKEGETNAFQIENDVEKILDKSNEEEGFINCNNVFHDGEEAQDMLEDVESKGNEELQENKRDDEMIEGLPFHLRNNEIGHHVQRQINIGECAVHENIVQATPDNLNTENKIELEDGLSKQDECDNLSEDQDANNFIASMEGVEVITDQPEYRDIDNSMELANIALEVVNNEPEAITEEGDVEERLPFKLFSMAEDALKRRVKMENSNASPISIQSGLDFGLIDLKLEQMQHDASVNWSSIFCSLENAEGMASELRGIERNMEKIEVSIIEENDDDSNEEEIPSNVNNTEAGNQPSIKIDDNKISEEVVEKTANTGATENHQATIEVEESETFYVLKNEMQLEFDENNIRTSSQSGMIDMDSEIVHDIKTCETRGESEDSYRVIMTEDEMEASDTSDKELEYAVHLETSEEADSPGSSGRKENLENTEQEISTGQKVTENENHRTTPTMGEIEINADMQREAGIESKFDNETEAHGLPQPKEELAENSTNQSILENGENHQAPQLMQEEKVFHEKFEKDAEVIKDRLRKIDEAKGKERERERLAVERAIREARERAFAEARERAAAERASADTRRRVMAEPRERPRKASIEANPKPSAEKHSKEAKLKAQRAAVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLNGAAGVSKVKKSFSFNDSQPKGQCSSSNFRHANSFNLGGPDASEREVGSAGESAQRSKARLERHQRTVERVANALAEKNIRDILGQREQEERNRLAEGLDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQPVPLTDIITTAAVKKAYRRATLSVHPDKLQQRGASIPQKYVCEKVFDLLKAAWNKFNMEERL 1457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12495153 12501716 + CmaCh01G019180.1 Cma01g01918 287611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1277 1297 - -
Cma01g01918 1457 Coils Coil 1215 1242 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 221 249 - -
Cma01g01918 1457 Gene3D DnaJ domain 1329 1456 IPR036869 -
Cma01g01918 1457 Coils Coil 1126 1146 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1020 1067 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 461 500 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1175 1223 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 228 249 - -
Cma01g01918 1457 Coils Coil 331 358 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 886 910 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1079 1102 - -
Cma01g01918 1457 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 945 - -
Cma01g01918 1457 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1098 1456 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1020 1040 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 355 414 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1041 1062 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 110 145 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1079 1093 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 368 413 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 479 496 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1175 1229 - -
Cma01g01918 1457 Coils Coil 1317 1356 - -
Cma01g01918 1457 PANTHER AUXILIN-LIKE PROTEIN 1 1098 1456 - -
Cma01g01918 1457 PANTHER AUXILIN-LIKE PROTEIN 1 1 945 - -
Cma01g01918 1457 SUPERFAMILY Chaperone J-domain 1318 1452 IPR036869 -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 1277 1326 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 461 478 - -
Cma01g01918 1457 MobiDBLite consensus disorder prediction 895 910 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01918 - - - bhj:120085690 1950.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01918 Cma-Chr1:12495153 Cma07g01273 Cma-Chr7:7101688 3.16E-53 dispersed
Cma01g01918 Cma-Chr1:12495153 Cma03g00736 Cma-Chr3:5861482 3.12E-20 wgd
Cma01g01918 Cma-Chr1:12495153 Cma07g00477 Cma-Chr7:2080968 4.57E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01918 Cma_Chr01 FPKM 13.472584 14.633589 7.946539 7.386948 24.219702 23.707281 24.815699 8.620847 7.654884 7.377698