Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01922 ATGGCGCTCAACCTAACAAATTCCTTCCTTCAACGGTCATTTTCTCCGGCTATCGCACCGCCGAAGAACAAGGAGTTAGGAGCGAGACGTTACCGGCCGGTGGTGACCTGCCGGAAAAAGGATGTTCATCCCCAATTCTACGAGGATGCGAAGGTTTATTGCAACGGAGAACTGGTGATGACGACCGGTGGGACTCAGAAAGAGTACTCCGTGGATGTGTGGTCGGGAAATCACCCGTTCTATTTGGGCAGCCGCTCCGCCCTGCTAGTAGACGCTGATCAGGTGGAGAAATTCCGCAAGAAATTTGGAGAGCTGTCGCAGTTGATGGAGATTCCTGTCCTTAAAGGTGAAATCGTTCTGCCCACAAAACGCAAATCCGGCGGCAAAGGGAAGAAGAAGTAG 402 51.99 MALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12514411 12515290 + CmaCh01G019220.1 Cma01g01922 287615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01922 133 TIGRFAM L31: ribosomal protein bL31 39 104 IPR002150 GO:0003735|GO:0005840|GO:0006412
Cma01g01922 133 PANTHER 50S RIBOSOMAL PROTEIN L31 34 133 - -
Cma01g01922 133 Gene3D Ribosomal protein L31 39 106 IPR042105 -
Cma01g01922 133 Pfam Ribosomal protein L31 39 103 IPR002150 GO:0003735|GO:0005840|GO:0006412
Cma01g01922 133 PRINTS Ribosomal protein L31 signature 68 83 IPR002150 GO:0003735|GO:0005840|GO:0006412
Cma01g01922 133 PRINTS Ribosomal protein L31 signature 39 56 IPR002150 GO:0003735|GO:0005840|GO:0006412
Cma01g01922 133 PANTHER 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC 34 133 IPR002150 GO:0003735|GO:0005840|GO:0006412
Cma01g01922 133 SUPERFAMILY L28p-like 39 105 IPR034704 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01922 K02909 RP-L31, rpmE; large subunit ribosomal protein L31 - csv:101221085 231.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01922 Cma09g00143 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01922 Cma-Chr1:12514411 Cma09g00143 Cma-Chr9:615746 5.19E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g978 . . . . . . . . . . Cma01g01922 Cma09g00143 . . . Cpe06g00100 . . . . . . . . . . . . . . . . . Cone17ag1353 Cone20ag0130 Lsi04g01692 Csa03g04232 Chy04g00483 . . Blo18g00808 . Bda01g01500 Bpe02g01698 . Bma01g00756 . . Cmo01g01985 Cmo09g00140 . . . . . Cpe02g00114 . . . . . . . Cla05g01920 Cam05g2057 Cec05g2070 Cco05g2121 Clacu05g2051 Cmu05g1928 Cre05g2051 . . . Cme04g00542
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007824 1 2 1 2 2 1 0 1 1 1 1 1 2 1 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01922 Cma_Chr01 FPKM 8.421734 8.707032 25.079157 26.857887 115.346573 112.606125 121.787231 31.587915 32.495182 34.088284