Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01931 ATGGAGTCTACGGCTGACCTCCATCAGCTTCAAGACCAGCTTCTTGTTCCTCCTCCTCCTCCCTCGTCGCCACTGTCGTCGCCTTCTTCGCCCATCGTTCCATCTTGTTTTTCCCTTCCAAGCACCCATGGCTGGACTCCCCATATCTCTTTGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTTGCAACTACAACTCAAGAATATTCAATGGATTGAGTTGTTCAGTTCCAGTAAGATCAGATTGTGGGGTGAAAAATACGAACAGTTCAATGCTTCTTCAAGATTTGGGGTTTGAATGGAATGGCGTGAGTTCTTCAGGGAGCTTCTTCTCTCAGTTTCTCCATGCTGGTGGAAAGATCAAAGAAGAAATGTTGAACACTCCTTCTACAAATCAAGATTTCCATCCTTTTCCTTCTACAAATCACGTCAAGAATAATGATTCCGATCTGAATGATCCCAGCCACAAGCTCTTCATCAAAACCCTGATTTCATCCGGCTCTCAAATCAACGGCGGTGATCATATCCAACCTGGACAATTCTTCAACATGATTTACCCAAGTATTAATGTCTCTGATTGGAACCTCTCATCTCCTCCGCCGCTGCCCTTCTCAAATTCCTTAGATTTGAACTTACAAACGCCGCCAGATTTGTTCCACTCACAAGATAGCTTCGCTATGTTTAAACAAACTCTCTCTGATTTTCACGATCAGATCCATCCGCCGGCGGCGGCGGCGGCGATTCTCCCATGCAGTTCAAGTAAGATGACAACACCCTTCAGCGCTGAACTAACTGAACCAGAACGACCTTGTACCTGCATCCAACCAACGCTCAATCAACCATCTCCTCCTCCTCTTAAGAAATCGCGATTGGACTCACGCGCTTCTTGCCCTCCATTCAAGGTTAGAAAAGAGAAACTAGGTGATAGAATTGCTGCCCTCCAACAATTGGTCGCACCCTTTGGCAAGACAGACACAGCATCTGTGTTAATGGAGGCCATTGGATACATAAAATTCCTTCAAAATCAAGTCGAGACGTTGAGCGTTCCATACATGAAGCCCTCCTGCAACAGAACCACTAGGCCGACATATCGGAGTTCGGTGGAAGGTGGACATGAAGGGCAGCTAGATCGAGATCTCAGAAGTAGAGGGCTGTGCTTGGTTCCATTGGGATGCTTGTCTTACGTGACCGGCGACGGCGGCGGAATTTGGACGCCACCGGGTTTTAATGGAGGAACTTCTAGATAA 1260 45.48 MESTADLHQLQDQLLVPPPPPSSPLSSPSSPIVPSCFSLPSTHGWTPHISLNNNNNNNNNNNNNNSCNYNSRIFNGLSCSVPVRSDCGVKNTNSSMLLQDLGFEWNGVSSSGSFFSQFLHAGGKIKEEMLNTPSTNQDFHPFPSTNHVKNNDSDLNDPSHKLFIKTLISSGSQINGGDHIQPGQFFNMIYPSINVSDWNLSSPPPLPFSNSLDLNLQTPPDLFHSQDSFAMFKQTLSDFHDQIHPPAAAAAILPCSSSKMTTPFSAELTEPERPCTCIQPTLNQPSPPPLKKSRLDSRASCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKPSCNRTTRPTYRSSVEGGHEGQLDRDLRSRGLCLVPLGCLSYVTGDGGGIWTPPGFNGGTSR 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12539255 12542309 - CmaCh01G019310.1 Cma01g01931 287624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01931 419 CDD bHLH_AtbHLH_like 302 352 IPR045239 -
Cma01g01931 419 MobiDBLite consensus disorder prediction 278 298 - -
Cma01g01931 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Cma01g01931 419 PANTHER OS01G0105700 PROTEIN 127 403 - -
Cma01g01931 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 359 IPR036638 GO:0046983
Cma01g01931 419 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 127 403 - -
Cma01g01931 419 Gene3D - 305 357 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01931 - - - cmax:111480855 767.303
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01931 Cma12g00448 CCT
Cma01g01931 Cma12g00448 ECH
Cma01g01931 Cma09g00137 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01931 Cma-Chr1:12539255 Cma11g00623 Cma-Chr11:2998384 1.07E-35 dispersed
Cma01g01931 Cma-Chr1:12539255 Cma12g00448 Cma-Chr12:2364423 7.56E-43 wgd
Cma01g01931 Cma-Chr1:12539255 Cma03g00720 Cma-Chr3:5810533 4.66E-32 wgd
Cma01g01931 Cma-Chr1:12539255 Cma07g00465 Cma-Chr7:2032412 2.66E-33 wgd
Cma01g01931 Cma-Chr1:12539255 Cma09g00137 Cma-Chr9:595234 6.06E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g990 . . . . . . . . . Cmo12g00398 Cma01g01931 Cma09g00137 Car01g01507 Car12g00423 . Cpe06g00096 Cpe07g00402 . . . . . . . Cla08g01466 Cam08g1954 Cec08g1529 Cco08g1667 Clacu08g1644 . Cre08g1429 . . . Cone20ag0124 Lsi04g01698 Csa03g04238 Chy04g00477 Cme03g01932 . Blo18g00805 . Bda01g01505 Bpe02g01703 . . . . Cmo01g01994 Cmo09g00133 Cma12g00448 . . Car09g00123 . Cpe02g00107 . . . . . . . Cla05g01913 Cam05g2051 Cec05g2062 Cco05g2115 Clacu05g2046 Cmu05g1922 Cre05g2045 Lsi08g01375 Csa02g02076 Chy03g01437 Cme04g00527
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004725 1 4 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01931 Cma_Chr01 FPKM 5.780177 5.988717 13.827568 16.409359 14.378322 12.062465 15.632595 0.954464 1.20436 1.141632