Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01935 ATGGCGGGAAAGGGCGAAGTGATTGCGTGCCATACCGTTGGATCATGGAAGCAGCAGCTCCTCAAAGGAAAACAATCCAATAAACTGATTGTTGTGGACTTCACTGCCGCATGGTGCGGTCCGTGCCGTGCCATGGCTCCAGTTTTTGCAGAGTTGGCTAAGAAGATTAGTAATGTCATATTCTTGAAAGTCGATGTTGATGAATTGATGGCTGTTGCGGCGGAATGGGGAGTGAGTGCACTCCCTTGCTTCATGTTCTTGAAGAATGGGAAGGTGGTGGACAGGTTTGTAGGCGCAAGAAAAGATCAGTTGCAGAAGATTGTATTACAGCATGCCTAA 339 47.79 MAGKGEVIACHTVGSWKQQLLKGKQSNKLIVVDFTAAWCGPCRAMAPVFAELAKKISNVIFLKVDVDELMAVAAEWGVSALPCFMFLKNGKVVDRFVGARKDQLQKIVLQHA 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12574707 12575858 - CmaCh01G019350.1 Cma01g01935 287628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01935 112 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Cma01g01935 112 PRINTS Thioredoxin family signature 30 38 - -
Cma01g01935 112 PRINTS Thioredoxin family signature 38 47 - -
Cma01g01935 112 PRINTS Thioredoxin family signature 77 88 - -
Cma01g01935 112 Gene3D Glutaredoxin 1 112 - -
Cma01g01935 112 SUPERFAMILY Thioredoxin-like 5 111 IPR036249 -
Cma01g01935 112 ProSiteProfiles Thioredoxin domain profile. 1 112 IPR013766 -
Cma01g01935 112 PANTHER THIOREDOXIN 1 112 - -
Cma01g01935 112 CDD TRX_family 25 108 - -
Cma01g01935 112 PANTHER THIOREDOXIN 1 112 - -
Cma01g01935 112 Pfam Thioredoxin 9 108 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01935 K03671 trxA; thioredoxin 1 - csv:101219430 193.356
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01935 Cma05g00273 CCT
Cma01g01935 Cma05g00273 ECH
Cma01g01935 Cma09g00130 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01935 Cma-Chr1:12574707 Cma04g01622 Cma-Chr4:8178170 1.65E-38 dispersed
Cma04g00178 Cma-Chr4:872188 Cma01g01935 Cma-Chr1:12574707 4.87E-50 transposed
Cma01g01935 Cma-Chr1:12574707 Cma12g00439 Cma-Chr12:2293396 1.89E-29 wgd
Cma01g01935 Cma-Chr1:12574707 Cma03g00711 Cma-Chr3:5772341 4.09E-46 wgd
Cma01g01935 Cma-Chr1:12574707 Cma05g00272 Cma-Chr5:1155062 4.16E-30 wgd
Cma01g01935 Cma-Chr1:12574707 Cma07g00455 Cma-Chr7:1987884 8.69E-47 wgd
Cma01g01935 Cma-Chr1:12574707 Cma09g00130 Cma-Chr9:561624 7.11E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000895 2 4 1 1 1 4 3 4 4 4 2 4 3 3 4 3 4 3 3 4 4 2 2 3 2 3 3 6 2 0 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01935 Cma_Chr01 FPKM 2.310258 2.395828 32.379421 28.927128 1.956325 2.569361 1.796709 8.166988 8.272451 10.532375