Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01937 ATGGACGTCGATCCTCGTCACTACGACCACATCGCTATCAACGACGGTGATGTTCAGAACATTGTTTTGTCGTATCTTGTTCATAATTGTTATAAAGAAACTGCAGAGTCGTTCACTGCCTCTACTGAGCTTAAACAGCAGACTGATTGTCTTGTTGGCATGGAGAAAAGAAAACGGATTTATGATTTTGCAGTAGAAGGGAATGCACTTAAGGCCATTGAGTTAACAGAAGAGGTAGCACATGGTTTACTCGAGAAGAATGAGGGCCTGCATTTTGATCTTTTGAGCCTTCATTTTGTTGAACTTGTTTGTTCTAGAAAATGCACAGAGGCCCTGGAATTTGCTCAGGTCAAGCTTGCCCCTTTTGGCAAGTTGCATAAATATGTGGAAAAACTTGAAGATTCCATGGCCCTGCTTGCTTATGAAGAACCAGAGAAGTCTCCAATGTTTCATCTGCTTAGCATGGATTACCGGCAAAGAGTAGCAGAAAATCTAAATCGAGAAATTCTTGCACATGCAAACTTGCCGAGCTATACAGCAATGGAAAGGCTGATAAAGCAGGCGACTGTAGTTAGGCAGTCCTTAAGCCAAGAGCTGGGCAAGGATGGGCCATCACCATTTTCCTTGAGGGATTTTCTGAAAAGCTAA 648 42.75 MDVDPRHYDHIAINDGDVQNIVLSYLVHNCYKETAESFTASTELKQQTDCLVGMEKRKRIYDFAVEGNALKAIELTEEVAHGLLEKNEGLHFDLLSLHFVELVCSRKCTEALEFAQVKLAPFGKLHKYVEKLEDSMALLAYEEPEKSPMFHLLSMDYRQRVAENLNREILAHANLPSYTAMERLIKQATVVRQSLSQELGKDGPSPFSLRDFLKS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12579163 12582188 + CmaCh01G019370.1 Cma01g01937 287630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01937 215 Pfam CTLH/CRA C-terminal to LisH motif domain 55 195 IPR024964 -
Cma01g01937 215 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 12 214 - -
Cma01g01937 215 SMART Lish 14 46 IPR006594 GO:0005515
Cma01g01937 215 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 66 110 IPR006595 -
Cma01g01937 215 PANTHER RAN BINDING PROTEIN 9-RELATED 12 214 - -
Cma01g01937 215 SMART toby_final6 106 201 IPR013144 -
Cma01g01937 215 SMART ctlh 53 110 IPR006595 -
Cma01g01937 215 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01937 K23338 GID8; glucose-induced degradation protein 8 - csv:101218951 377.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01937 Cma-Chr1:12579163 Cma13g00663 Cma-Chr13:6193503 2.30E-17 dispersed
Cma01g01937 Cma-Chr1:12579163 Cma09g00127 Cma-Chr9:551126 1.38E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1020 . . . . . . . . . . Cma01g01937 . Car01g01514 . . . . . . . . . . . . . . . . . . . . Cone17ag1368 Cone20ag0111 Lsi04g01709 Csa03g04247 Chy04g00467 . Blo17g00772 Blo18g00795 Bda08g01254 Bda01g01517 Bpe02g01713 Bpe05g00116 Bma01g00743 Bma05g00140 . Cmo01g01999 Cmo09g00125 . . . Car09g00114 . Cpe02g00099 . . . . . . . . . . . . . . . . . Cme04g00512
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013213 2 1 1 3 2 1 2 0 1 1 0 1 1 1 1 2 0 2 1 0 1 1 1 0 0 0 0 0 0 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01937 Cma_Chr01 FPKM 6.435225 8.499025 6.679704 6.12492 7.502474 7.769071 10.041397 8.261583 9.470487 10.101481