Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01938 | ATGGAAACAAAGCCCAGAAAACCCACCACCAACGTCGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCCGACAACGCCTCTTGCACATTCAAAGGCGTCCGCCAGCGGACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCAAATCGCGGCGCTCGTCTCTGGCTCGGCACGTTCGACACCGCCCATGAAGCTGCCGTGGCTTACGATGCTGCCGCTCGTAAGCTCTATGGGTCTGATGCTAAGCTCAACCTCCCTCAAACTGCGTCAGAGCCTCAACAGTCTGCACCCACCGCTGCAATGCCGTCGCCCTCTCCACCGGTGGCGGAGATGGAGCCAATCGGAGGGCTATGGGGAAGTGAGGATGTGAATTTTGATGAGTCGATATGGAGAGAGGCGGTGATGTCTTTGGATTTTCCTATGATTGGTGATGATGAAGGGTTTTATTTCGATGGGGTGGGAGGTCGGGACGCTATGCAGTGGTGCATGTGA | 507 | 57.0 | METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMEPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12583784 | 12584290 | + | CmaCh01G019380.1 | Cma01g01938 | 287631 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01938 | 168 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cma01g01938 | 168 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
Cma01g01938 | 168 | CDD | AP2 | 33 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01938 | 168 | Gene3D | AP2/ERF domain | 34 | 93 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g01938 | 168 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01938 | 168 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01938 | 168 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 116 | 157 | - | - | |
Cma01g01938 | 168 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 11 | 109 | - | - | |
Cma01g01938 | 168 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01938 | 168 | PRINTS | Ethylene responsive element binding protein signature | 57 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01938 | 168 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 11 | 109 | - | - | |
Cma01g01938 | 168 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 116 | 157 | - | - | |
Cma01g01938 | 168 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cma01g01938 | 168 | MobiDBLite | consensus disorder prediction | 89 | 120 | - | - | |
Cma01g01938 | 168 | Pfam | AP2 domain | 34 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01938 | 168 | SUPERFAMILY | DNA-binding domain | 34 | 92 | IPR016177 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01938 | Cma05g00274 | CCT | |
Cma01g01938 | Cma12g00437 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01938 | Cma-Chr1:12583784 | Cma03g00323 | Cma-Chr3:4040777 | 1.24E-34 | dispersed | |
Cma01g01938 | Cma-Chr1:12583784 | Cma12g00437 | Cma-Chr12:2284706 | 1.88E-66 | wgd | |
Cma01g01938 | Cma-Chr1:12583784 | Cma05g00274 | Cma-Chr5:1160764 | 9.22E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34380 | PF00847 | AP2 | 2.20E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01938 | - | - | csv:101204876 | 236.884 |