Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01938 ATGGAAACAAAGCCCAGAAAACCCACCACCAACGTCGCTCAAGCCAGCTCCCGCAAGGGCTGCATGAGAGGCAAAGGCGGACCCGACAACGCCTCTTGCACATTCAAAGGCGTCCGCCAGCGGACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCAAATCGCGGCGCTCGTCTCTGGCTCGGCACGTTCGACACCGCCCATGAAGCTGCCGTGGCTTACGATGCTGCCGCTCGTAAGCTCTATGGGTCTGATGCTAAGCTCAACCTCCCTCAAACTGCGTCAGAGCCTCAACAGTCTGCACCCACCGCTGCAATGCCGTCGCCCTCTCCACCGGTGGCGGAGATGGAGCCAATCGGAGGGCTATGGGGAAGTGAGGATGTGAATTTTGATGAGTCGATATGGAGAGAGGCGGTGATGTCTTTGGATTTTCCTATGATTGGTGATGATGAAGGGTTTTATTTCGATGGGGTGGGAGGTCGGGACGCTATGCAGTGGTGCATGTGA 507 57.0 METKPRKPTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTASEPQQSAPTAAMPSPSPPVAEMEPIGGLWGSEDVNFDESIWREAVMSLDFPMIGDDEGFYFDGVGGRDAMQWCM 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12583784 12584290 + CmaCh01G019380.1 Cma01g01938 287631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01938 168 MobiDBLite consensus disorder prediction 1 35 - -
Cma01g01938 168 MobiDBLite consensus disorder prediction 89 103 - -
Cma01g01938 168 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Cma01g01938 168 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Cma01g01938 168 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Cma01g01938 168 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Cma01g01938 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 116 157 - -
Cma01g01938 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 11 109 - -
Cma01g01938 168 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Cma01g01938 168 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Cma01g01938 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 109 - -
Cma01g01938 168 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 116 157 - -
Cma01g01938 168 MobiDBLite consensus disorder prediction 1 17 - -
Cma01g01938 168 MobiDBLite consensus disorder prediction 89 120 - -
Cma01g01938 168 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Cma01g01938 168 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01938 Cma05g00274 CCT
Cma01g01938 Cma12g00437 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01938 Cma-Chr1:12583784 Cma03g00323 Cma-Chr3:4040777 1.24E-34 dispersed
Cma01g01938 Cma-Chr1:12583784 Cma12g00437 Cma-Chr12:2284706 1.88E-66 wgd
Cma01g01938 Cma-Chr1:12583784 Cma05g00274 Cma-Chr5:1160764 9.22E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34380 PF00847 AP2 2.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01938 - - csv:101204876 236.884