Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01939 ATGACGGGGTTGTTATATTTAGGTGGTAAACAAGAGGATGATCAAGAACAAAGAGGAAGAGAGCAGCAATTGTTTTTGTACAATAGTAGAAACAACGAGGAGATCTACTCCAAGGGGTTGGAGATATGGCCACAATATGGGCAGCAGCATCAAGCGGTGGAGAATTACATTTCCTTTGGAGTGGGGCCGAGTAGGATGAACTTGATGATCAACGCCTCTGATCATGAGTTTACGATGATGAGACAAGGAGCTGCTACTGGCGGCGGTGGAGGTGGGATTAATTGCCAAGATTGTGGGAATCAAGCTAAGAAAGACTGCTCCCATTTGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGTCAAACCCATGTTAAGAGTACTTGGGTTCCGGCTGCCAAGCGTCGGGAACGACAACAACAACGACAACAACAATTTCGACCAGATCAGTTTGATCAAACCACTCACAAATGCCATCGAGAAACTCAACCTTCTATTCCCCCTGCCACGGTCACCTCAGGGTTAGAACTTGCACATTTTCCAGCTGAATTCAACTCCCCAGCTGTTTTCCGCTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAGCAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCACGGTCCCGAAACCAGCCAGAATTTAAGCACCGGTGGTGAGAGCTCGTATAGCCATGGCGGGGATGACGACGGGCAAGGCTTGGATCTGGTGATCGGAGCGTCCAACAGCTTCGGGAGAGTTAACCCATCCGCCTCATTCGTGGAGTCTTCACTATATCCTATCCCGATCAACACGTTCACCCCGGGTATGCAAAATTTCCCTTCCTCAAGAACATAA 894 47.87 MTGLLYLGGKQEDDQEQRGREQQLFLYNSRNNEEIYSKGLEIWPQYGQQHQAVENYISFGVGPSRMNLMINASDHEFTMMRQGAATGGGGGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQRQQQFRPDQFDQTTHKCHRETQPSIPPATVTSGLELAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDHGPETSQNLSTGGESSYSHGGDDDGQGLDLVIGASNSFGRVNPSASFVESSLYPIPINTFTPGMQNFPSSRT 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12590607 12592045 - CmaCh01G019390.1 Cma01g01939 287632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01939 297 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 293 - -
Cma01g01939 297 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 94 136 IPR006510 -
Cma01g01939 297 MobiDBLite consensus disorder prediction 230 249 - -
Cma01g01939 297 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 180 228 IPR006511 -
Cma01g01939 297 MobiDBLite consensus disorder prediction 135 169 - -
Cma01g01939 297 Pfam Domain of unknown function (DUF702) 92 229 - -
Cma01g01939 297 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01939 - - - csv:101220654 384.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01939 Cma05g00281 CCT
Cma01g01939 Cma12g00430 CCT
Cma01g01939 Cma12g00430 ECH
Cma01g01939 Cma05g00281 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01939 Cma-Chr1:12590607 Cma04g00769 Cma-Chr4:3906567 3.71E-57 dispersed
Cma19g00283 Cma-Chr19:2141068 Cma01g01939 Cma-Chr1:12590607 2.82E-121 transposed
Cma01g01939 Cma-Chr1:12590607 Cma12g00430 Cma-Chr12:2242402 9.81E-85 wgd
Cma01g01939 Cma-Chr1:12590607 Cma03g00708 Cma-Chr3:5754845 7.42E-62 wgd
Cma01g01939 Cma-Chr1:12590607 Cma05g00281 Cma-Chr5:1203604 6.90E-93 wgd
Cma01g01939 Cma-Chr1:12590607 Cma07g00452 Cma-Chr7:1973447 1.25E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1034 Blo01g01581 . Bda01g00510 Bda03g00274 Bpe02g00368 Bpe04g00228 Bma04g00224 Bma01g02345 Cmo05g00287 Cmo12g00381 Cma01g01939 . Car01g01515 Car12g00407 . . Cpe07g00386 Bhi04g00221 . . . Hepe10g0123 . . Cla08g01447 Cam08g1930 Cec08g1505 Cco08g1643 Clacu08g1620 . Cre08g1406 Cone4ag1946 Cone7ag1860 Cone17ag1376 Cone20ag0106 Lsi04g01713 Csa03g04251 Chy04g00453 Cme03g01908 Blo17g00762 Blo18g00791 Bda08g01246 Bda01g01519 Bpe02g01715 Bpe05g00123 Bma01g00741 Bma05g00149 . Cmo01g02001 . Cma12g00430 Cma05g00281 Car05g00232 . Cpe11g00233 Cpe02g00098 . . . . . . . Cla05g01902 Cam05g2038 Cec05g2046 Cco05g2102 Clacu05g2030 Cmu05g1910 Cre05g2032 Lsi08g01351 Csa02g02103 Chy03g01412 Cme04g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000786 4 3 3 4 4 3 4 3 3 3 3 3 4 3 3 4 3 4 4 3 3 2 2 2 2 3 2 5 3 1 93
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34381 PF05142 DUF702 8.30E-60 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01939 Cma_Chr01 FPKM 3.758512 3.2745 0.213903 0.0 0.0 0.26871 0.690877 0.50819 0.513692 0.253585