Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01941 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAGAATCCTACCAACAGGCAGGTCACCTACTCGAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAGCTCACCGTGCTCTGCGATGCCAGAGTGTCCATCATCATGTTCTCGAGTACCGGAAAACTCCATGAGTATATCAGCCCTTCCACCTCGACCAAGGAGCTTTTCGATCACTACCAGAAGACTTTAGGCGTCGATCTATGGATCTCTCACTTCCAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGACGTGAATCGAAATCTCCGCAGACAAATTAGGCAGAGGATGGGGGAATATATGAATGATCTGAGCTTTGAGGAGCTGCGTTGTTTAGAGCAAGATATGGATAATGCTGTGAGGATCATTAGGGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTGAAGAGTGTTGGAGAAATTCACAAGGCTCTTCTCCAGGAGTTTGACATTGCAACAGGGGAAGAACCACACTATGGGTTGGTAGACAATGAAGGAGTAGGAGGGGACTACGATTCAGTGATGAGATACTCAGGCGGCGGAGGACCTCGCATTTTTGCACTGCGGCTCCACCCCAACCATCCTAATATTCACCACGCCCACCCTTCGGATCTCACTACTTATCCGCTTCTTGAGTAG 696 48.85 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSSTGKLHEYISPSTSTKELFDHYQKTLGVDLWISHFQRMQENLKKLKDVNRNLRRQIRQRMGEYMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKALLQEFDIATGEEPHYGLVDNEGVGGDYDSVMRYSGGGGPRIFALRLHPNHPNIHHAHPSDLTTYPLLE 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12594843 12596419 + CmaCh01G019410.1 Cma01g01941 287634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01941 231 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g01941 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma01g01941 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma01g01941 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma01g01941 231 Coils Coil 84 111 - -
Cma01g01941 231 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g01941 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma01g01941 231 PANTHER APETALA3 1 228 - -
Cma01g01941 231 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Cma01g01941 231 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Cma01g01941 231 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cma01g01941 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma01g01941 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma01g01941 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma01g01941 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01941 Cma09g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01365 Cma-Chr1:9719667 Cma01g01941 Cma-Chr1:12594843 4.72E-42 dispersed
Cma01g01941 Cma-Chr1:12594843 Cma09g00768 Cma-Chr9:3703771 9.09E-45 dispersed
Cma01g01941 Cma-Chr1:12594843 Cma09g00125 Cma-Chr9:538248 2.41E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34382 PF01486 K-box 3.60E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01941 K09264 - csv:101218008 397.512